SHOGoiN Cell Methylome: GSM2773670

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773670


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M297Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000197990 ZNF734P zinc finger protein 734, pseudogene 2.8074 0.0000
2 ENSG00000232105 RPL32P28 ribosomal protein L32 pseudogene 28 2.8074 0.0000
3 ENSG00000251961 RNU6ATAC13P RNA, U6atac small nuclear 13, pseudogene 2.8074 0.0000
4 ENSG00000280096 TEC 2.8074 0.0000
5 ENSG00000237569 TUBAP tubulin alpha pseudogene 2.7332 0.0000
6 ENSG00000223572 CKMT1A creatine kinase, mitochondrial 1A 2.7233 0.0000
7 ENSG00000200608 SNORD114-11 small nucleolar RNA, C/D box 114-11 2.6962 0.0000
8 ENSG00000223881 novel transcript 2.5850 0.0002
9 ENSG00000249579 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.5850 0.0002
10 ENSG00000276316 OR8G7P olfactory receptor family 8 subfamily G member 7 pseudogene 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000270030 novel transcript -2.0666 0.0000
63340 ENSG00000107566 ERLIN1 ER lipid raft associated 1 -2.0663 0.0000
63339 ENSG00000260859 novel transcript, sense intronic to CRISPLD2 -2.0660 0.0000
63338 ENSG00000214336 FOXI3 forkhead box I3 -2.0658 0.0000
63337 ENSG00000157557 ETS2 ETS proto-oncogene 2, transcription factor -2.0656 0.0000
63336 ENSG00000259132 novel protein -2.0654 0.0000
63335 ENSG00000284356 TAF11L10 TATA-box binding protein associated factor 11 like 10 -2.0652 0.0000
63334 ENSG00000248422 TAF11-like protein pseudogene -2.0652 0.0000
63333 ENSG00000213185 FAM24B family with sequence similarity 24 member B -2.0650 0.0000
63332 ENSG00000270930 GRAMD4P8 GRAM domain containing 4 pseudogene 8 -2.0645 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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