Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773670

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773670


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M297Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000197990 ZNF734P zinc finger protein 734, pseudogene 2.8074 0.0000
2 ENSG00000232105 RPL32P28 ribosomal protein L32 pseudogene 28 2.8074 0.0000
3 ENSG00000251961 RNU6ATAC13P RNA, U6atac small nuclear 13, pseudogene 2.8074 0.0000
4 ENSG00000280096 TEC 2.8074 0.0000
5 ENSG00000237569 TUBAP1 tubulin alpha pseudogene 1 2.7332 0.0000
6 ENSG00000223572 CKMT1A creatine kinase, mitochondrial 1A 2.7233 0.0000
7 ENSG00000200608 SNORD114-11 small nucleolar RNA, C/D box 114-11 2.6962 0.0000
8 ENSG00000223881 novel transcript 2.5850 0.0002
9 ENSG00000249579 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.5850 0.0002
10 ENSG00000276316 OR8G7P olfactory receptor family 8 subfamily G member 7 pseudogene 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000165566 AMER2 APC membrane recruitment protein 2 -2.0077 0.0000
63127 ENSG00000267064 UXT-AS1 UXT antisense RNA 1 -2.0076 0.0000
63125 ENSG00000256237 novel transcript -2.0065 0.0000
63124 ENSG00000129514 FOXA1 forkhead box A1 -2.0064 0.0000
63123 ENSG00000225815 novel transcript -2.0061 0.0232
63122 ENSG00000135316 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein -2.0057 0.0000
63121 ENSG00000108511 HOXB6 homeobox B6 -2.0056 0.0000
63120 ENSG00000223803 RPS20P14 ribosomal protein S20 pseudogene 14 -2.0055 0.0000
63119 ENSG00000283712 MIR6727 microRNA 6727 -2.0050 0.0000
10 ENSG00000276316 OR8G7P olfactory receptor family 8 subfamily G member 7 pseudogene 2.5850 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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