Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773671
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773671
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M298
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000214429
CYCSP6
CYCS pseudogene 6
3.2857
0.0000
2
ENSG00000225354
RPL7AP52
ribosomal protein L7a pseudogene 52
3.1699
0.0000
3
ENSG00000258501
EIF3LP1
eukaryotic translation initiation factor 3 subunit L pseudogene 1
3.1699
0.0000
4
ENSG00000259149
novel transcript
3.1699
0.0000
5
ENSG00000139330
KERA
keratocan
3.0000
0.0000
6
ENSG00000201674
Small nucleolar RNA U3
3.0000
0.0000
7
ENSG00000235011
novel transcript
3.0000
0.0000
8
ENSG00000242291
RPL36AP51
ribosomal protein L36a pseudogene 51
3.0000
0.0000
9
ENSG00000250532
novel transcript
3.0000
0.0000
10
ENSG00000250544
LINC02059
long intergenic non-protein coding RNA 2059
2.9886
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000156381
ANKRD9
ankyrin repeat domain 9
-2.3416
0.0000
63127
ENSG00000275833
sulfatase modifying factor 2 (SUMF2) pseudogene
-2.3411
0.0000
63126
ENSG00000152192
POU4F1
POU class 4 homeobox 1
-2.3410
0.0000
63125
ENSG00000164900
GBX1
gastrulation brain homeobox 1
-2.3410
0.0000
63124
ENSG00000231090
MIR4422HG
MIR4422 host gene
-2.3406
0.0000
63123
ENSG00000273571
NA
-2.3404
0.0000
63122
ENSG00000145198
VWA5B2
von Willebrand factor A domain containing 5B2
-2.3404
0.0000
63120
ENSG00000272572
novel transcript, antisense to FAM178A
-2.3394
0.0000
63119
ENSG00000238597
SNORD4B
small nucleolar RNA, C/D box 4B
-2.3394
0.0000
10
ENSG00000250544
LINC02059
long intergenic non-protein coding RNA 2059
2.9886
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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