Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773671

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773671 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M298	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000214429	CYCSP6	CYCS pseudogene 6	3.2857	0.0000
2	ENSG00000225354	RPL7AP52	ribosomal protein L7a pseudogene 52	3.1699	0.0000
3	ENSG00000258501	EIF3LP1	eukaryotic translation initiation factor 3 subunit L pseudogene 1	3.1699	0.0000
4	ENSG00000259149		novel transcript	3.1699	0.0000
5	ENSG00000139330	KERA	keratocan	3.0000	0.0000
6	ENSG00000201674		Small nucleolar RNA U3	3.0000	0.0000
7	ENSG00000235011		novel transcript	3.0000	0.0000
8	ENSG00000242291	RPL36AP51	ribosomal protein L36a pseudogene 51	3.0000	0.0000
9	ENSG00000250532		novel transcript	3.0000	0.0000
10	ENSG00000250544	LINC02059	long intergenic non-protein coding RNA 2059	2.9886	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000156381	ANKRD9	ankyrin repeat domain 9	-2.3416	0.0000
63127	ENSG00000275833		sulfatase modifying factor 2 (SUMF2) pseudogene	-2.3411	0.0000
63126	ENSG00000152192	POU4F1	POU class 4 homeobox 1	-2.3410	0.0000
63125	ENSG00000164900	GBX1	gastrulation brain homeobox 1	-2.3410	0.0000
63124	ENSG00000231090	MIR4422HG	MIR4422 host gene	-2.3406	0.0000
63123	ENSG00000273571		NA	-2.3404	0.0000
63122	ENSG00000145198	VWA5B2	von Willebrand factor A domain containing 5B2	-2.3404	0.0000
63120	ENSG00000272572		novel transcript, antisense to FAM178A	-2.3394	0.0000
63119	ENSG00000238597	SNORD4B	small nucleolar RNA, C/D box 4B	-2.3394	0.0000
10	ENSG00000250544	LINC02059	long intergenic non-protein coding RNA 2059	2.9886	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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