SHOGoiN Cell Methylome: GSM2773671

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773671


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M298Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214429 CYCSP6 CYCS pseudogene 6 3.2857 0.0000
2 ENSG00000225354 RPL7AP52 ribosomal protein L7a pseudogene 52 3.1699 0.0000
3 ENSG00000258501 EIF3LP1 eukaryotic translation initiation factor 3 subunit L pseudogene 1 3.1699 0.0000
4 ENSG00000259149 novel transcript 3.1699 0.0000
5 ENSG00000139330 KERA keratocan 3.0000 0.0000
6 ENSG00000201674 NA 3.0000 0.0000
7 ENSG00000235011 novel transcript 3.0000 0.0000
8 ENSG00000242291 RPL36AP51 ribosomal protein L36a pseudogene 51 3.0000 0.0000
9 ENSG00000250532 novel transcript 3.0000 0.0000
10 ENSG00000250544 LINC02059 long intergenic non-protein coding RNA 2059 2.9886 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000120837 NFYB nuclear transcription factor Y subunit beta -2.4274 0.0000
63340 ENSG00000246022 ALDH1L1-AS2 ALDH1L1 antisense RNA 2 -2.4273 0.0000
63339 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -2.4270 0.0000
63338 ENSG00000166573 GALR1 galanin receptor 1 -2.4268 0.0000
63337 ENSG00000273514 FOXD4L6 forkhead box D4 like 6 -2.4268 0.0000
63336 ENSG00000224592 novel transcript -2.4265 0.0000
63335 ENSG00000259500 KRT8P24 keratin 8 pseudogene 24 -2.4254 0.0000
63334 ENSG00000238113 LINC01410 long intergenic non-protein coding RNA 1410 -2.4246 0.0000
63333 ENSG00000125878 TCF15 transcription factor 15 -2.4244 0.0000
63332 ENSG00000119523 ALG2 ALG2 alpha-1,3/1,6-mannosyltransferase -2.4243 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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