SHOGoiN Cell Methylome: GSM2773671
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773671 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M298 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000214429 | CYCSP6 | CYCS pseudogene 6 | 3.2857 | 0.0000 |
| 2 | ENSG00000225354 | RPL7AP52 | ribosomal protein L7a pseudogene 52 | 3.1699 | 0.0000 |
| 3 | ENSG00000258501 | EIF3LP1 | eukaryotic translation initiation factor 3 subunit L pseudogene 1 | 3.1699 | 0.0000 |
| 4 | ENSG00000259149 | novel transcript | 3.1699 | 0.0000 | |
| 5 | ENSG00000139330 | KERA | keratocan | 3.0000 | 0.0000 |
| 6 | ENSG00000201674 | NA | 3.0000 | 0.0000 | |
| 7 | ENSG00000235011 | novel transcript | 3.0000 | 0.0000 | |
| 8 | ENSG00000242291 | RPL36AP51 | ribosomal protein L36a pseudogene 51 | 3.0000 | 0.0000 |
| 9 | ENSG00000250532 | novel transcript | 3.0000 | 0.0000 | |
| 10 | ENSG00000250544 | LINC02059 | long intergenic non-protein coding RNA 2059 | 2.9886 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000120837 | NFYB | nuclear transcription factor Y subunit beta | -2.4274 | 0.0000 |
| 63340 | ENSG00000246022 | ALDH1L1-AS2 | ALDH1L1 antisense RNA 2 | -2.4273 | 0.0000 |
| 63339 | ENSG00000253563 | NKX2-1-AS1 | NKX2-1 antisense RNA 1 | -2.4270 | 0.0000 |
| 63338 | ENSG00000166573 | GALR1 | galanin receptor 1 | -2.4268 | 0.0000 |
| 63337 | ENSG00000273514 | FOXD4L6 | forkhead box D4 like 6 | -2.4268 | 0.0000 |
| 63336 | ENSG00000224592 | novel transcript | -2.4265 | 0.0000 | |
| 63335 | ENSG00000259500 | KRT8P24 | keratin 8 pseudogene 24 | -2.4254 | 0.0000 |
| 63334 | ENSG00000238113 | LINC01410 | long intergenic non-protein coding RNA 1410 | -2.4246 | 0.0000 |
| 63333 | ENSG00000125878 | TCF15 | transcription factor 15 | -2.4244 | 0.0000 |
| 63332 | ENSG00000119523 | ALG2 | ALG2 alpha-1,3/1,6-mannosyltransferase | -2.4243 | 0.0000 |
