SHOGoiN Cell Methylome: GSM2773673

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773673


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M300Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259257 Coiled-coil domain-containing protein 117 (CC117) pseudogene 2.5850 0.0001
2 ENSG00000153714 LURAP1L leucine rich adaptor protein 1 like 2.3219 0.0000
3 ENSG00000214073 RPL21P17 ribosomal protein L21 pseudogene 17 2.3219 0.0000
4 ENSG00000233278 RPS26P2 ribosomal protein S26 pseudogene 2 2.3219 0.0007
5 ENSG00000234567 novel transcript 2.3219 0.0000
6 ENSG00000236086 HMGN2P28 high mobility group nucleosomal binding domain 2 pseudogene 28 2.3219 0.0007
7 ENSG00000249111 novel transcript 2.3219 0.0000
8 ENSG00000257109 OR4F28P olfactory receptor family 4 subfamily F member 28 pseudogene 2.3219 0.0007
9 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 2.3219 0.0007
10 ENSG00000219627 CYCSP17 CYCS pseudogene 17 2.1672 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223440 novel transcript -2.1101 0.0943
63340 ENSG00000227473 TSSK5P testis specific serine kinase 5, pseudogene -2.1101 0.0000
63339 ENSG00000104332 SFRP1 secreted frizzled related protein 1 -2.1101 0.0000
63338 ENSG00000265766 CXADRP3 CXADR pseudogene 3 -2.1094 0.0000
63337 ENSG00000238419 RNU7-186P RNA, U7 small nuclear 186 pseudogene -2.1089 0.0000
63336 ENSG00000164100 NDST3 N-deacetylase and N-sulfotransferase 3 -2.1088 0.0000
63335 ENSG00000278546 novel transcript -2.1086 0.0000
63334 ENSG00000261759 novel transcript, antisense to ITPRIPL2 -2.1086 0.0000
63333 ENSG00000122691 TWIST1 twist family bHLH transcription factor 1 -2.1081 0.0000
63332 ENSG00000184303 DRD5P1 dopamine receptor D5 pseudogene 1 -2.1081 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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