Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773673

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773673


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M300Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259257 Coiled-coil domain-containing protein 117 (CC117) pseudogene 2.5850 0.0001
2 ENSG00000153714 LURAP1L leucine rich adaptor protein 1 like 2.3219 0.0000
3 ENSG00000214073 RPL21P17 ribosomal protein L21 pseudogene 17 2.3219 0.0000
4 ENSG00000233278 RPS26P2 ribosomal protein S26 pseudogene 2 2.3219 0.0007
5 ENSG00000234567 novel transcript 2.3219 0.0000
6 ENSG00000236086 HMGN2P28 high mobility group nucleosomal binding domain 2 pseudogene 28 2.3219 0.0007
7 ENSG00000249111 novel transcript 2.3219 0.0000
8 ENSG00000257109 OR4F28P olfactory receptor family 4 subfamily F member 28 pseudogene 2.3219 0.0007
9 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 2.3219 0.0007
10 ENSG00000219627 CYCSP17 CYCS pseudogene 17 2.1672 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000196227 FAM217B family with sequence similarity 217 member B -2.0434 0.0000
63127 ENSG00000015153 YAF2 YY1 associated factor 2 -2.0434 0.0000
63126 ENSG00000163888 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 -2.0429 0.0000
63125 ENSG00000167700 MFSD3 major facilitator superfamily domain containing 3 -2.0428 0.0000
63124 ENSG00000278631 SOWAHCP5 SOWAHC pseudogene 5 -2.0427 0.0000
63123 ENSG00000239182 NA -2.0418 0.0000
63122 ENSG00000239323 ribosomal protein L9 (RPL9) pseudogene -2.0415 0.0000
63121 ENSG00000117151 CTBS chitobiase -2.0415 0.0000
63120 ENSG00000130054 FAM155B family with sequence similarity 155 member B -2.0412 0.0000
63119 ENSG00000139574 NPFF neuropeptide FF-amide peptide precursor -2.0409 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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