Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773674

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773674 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M301	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000271111		SH3-domain binding protein 4 (SH3BP4) pseudogene	2.3219	0.0004
2	ENSG00000224539	SAGE4P	sarcoma antigen 4, pseudogene	2.0000	0.0000
3	ENSG00000225808	DNAJC19P5	DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5	2.0000	0.0000
4	ENSG00000234189		mitochondrially encoded cytochrome b (MT-CYB) pseudogene	2.0000	0.0027
5	ENSG00000234751		ribosomal protein L15 (RPL15) pseudogene	2.0000	0.0027
6	ENSG00000258394		novel transcript, sense overlapping to a novel protein	2.0000	0.0027
7	ENSG00000259324	OR11K1BP	olfactory receptor family 11 subfamily K member 1B pseudogene	2.0000	0.0000
8	ENSG00000239280		pseudogene similar to part of dihydrolipoamide branched chain transacylase E2 DBT	1.9110	0.0000
9	ENSG00000238777	RNU7-141P	RNA, U7 small nuclear 141 pseudogene	1.7925	0.0001
10	ENSG00000200635		Y RNA	1.7233	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000163950	SLBP	stem-loop binding protein	-2.0023	0.0000
63127	ENSG00000169618	PROKR1	prokineticin receptor 1	-2.0015	0.0000
63126	ENSG00000224592	MIR3659HG	MIR3659 host gene	-2.0014	0.0000
63125	ENSG00000135333	EPHA7	EPH receptor A7	-2.0013	0.0000
63124	ENSG00000219626	FAM228B	family with sequence similarity 228 member B	-2.0012	0.0000
63123	ENSG00000230798	FOXD3-AS1	FOXD3 antisense RNA 1	-2.0011	0.0000
63122	ENSG00000054148	PHPT1	phosphohistidine phosphatase 1	-2.0010	0.0000
63121	ENSG00000184900	SUMO3	small ubiquitin like modifier 3	-2.0010	0.0000
63120	ENSG00000238045		novel transcript, antisense to C16orf53 and MVP	-2.0010	0.0000
63119	ENSG00000122042	UBL3	ubiquitin like 3	-2.0010	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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