SHOGoiN Cell Methylome: GSM2773674

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773674


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M301Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271111 SH3-domain binding protein 4 (SH3BP4) pseudogene 2.3219 0.0004
2 ENSG00000224539 SAGE4P sarcoma antigen 4, pseudogene 2.0000 0.0000
3 ENSG00000225808 DNAJC19P5 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5 2.0000 0.0000
4 ENSG00000234189 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.0000 0.0027
5 ENSG00000234751 ribosomal protein L15 (RPL15) pseudogene 2.0000 0.0027
6 ENSG00000258394 novel transcript, sense overlapping to a novel protein 2.0000 0.0027
7 ENSG00000259324 OR11K1P olfactory receptor family 11 subfamily K member 1 pseudogene 2.0000 0.0000
8 ENSG00000239280 pseudogene similar to part of dihydrolipoamide branched chain transacylase E2 DBT 1.9110 0.0000
9 ENSG00000238777 RNU7-141P RNA, U7 small nuclear 141 pseudogene 1.7925 0.0001
10 ENSG00000200635 NA 1.7233 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000106799 TGFBR1 transforming growth factor beta receptor 1 -2.0685 0.0000
63340 ENSG00000280789 PAGR1 PAXIP1 associated glutamate rich protein 1 -2.0684 0.0000
63339 ENSG00000204237 OXLD1 oxidoreductase like domain containing 1 -2.0681 0.0000
63338 ENSG00000180044 C3orf80 chromosome 3 open reading frame 80 -2.0677 0.0000
63337 ENSG00000233237 LINC00472 long intergenic non-protein coding RNA 472 -2.0676 0.0000
63336 ENSG00000250316 ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2) pseudogene -2.0676 0.0000
63335 ENSG00000099625 CBARP CACN subunit beta associated regulatory protein -2.0675 0.0000
63334 ENSG00000283829 MIR378I microRNA 378i -2.0664 0.0000
63333 ENSG00000232599 odz, odd Oz/ten-m homolog 1(Drosophila) (ODZ1) pseudogene -2.0664 0.0000
63332 ENSG00000283213 novel transcript -2.0662 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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