SHOGoiN Cell Methylome: GSM2773674
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773674 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M301 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000271111 | SH3-domain binding protein 4 (SH3BP4) pseudogene | 2.3219 | 0.0004 | |
| 2 | ENSG00000224539 | SAGE4P | sarcoma antigen 4, pseudogene | 2.0000 | 0.0000 |
| 3 | ENSG00000225808 | DNAJC19P5 | DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5 | 2.0000 | 0.0000 |
| 4 | ENSG00000234189 | mitochondrially encoded cytochrome b (MT-CYB) pseudogene | 2.0000 | 0.0027 | |
| 5 | ENSG00000234751 | ribosomal protein L15 (RPL15) pseudogene | 2.0000 | 0.0027 | |
| 6 | ENSG00000258394 | novel transcript, sense overlapping to a novel protein | 2.0000 | 0.0027 | |
| 7 | ENSG00000259324 | OR11K1P | olfactory receptor family 11 subfamily K member 1 pseudogene | 2.0000 | 0.0000 |
| 8 | ENSG00000239280 | pseudogene similar to part of dihydrolipoamide branched chain transacylase E2 DBT | 1.9110 | 0.0000 | |
| 9 | ENSG00000238777 | RNU7-141P | RNA, U7 small nuclear 141 pseudogene | 1.7925 | 0.0001 |
| 10 | ENSG00000200635 | NA | 1.7233 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000106799 | TGFBR1 | transforming growth factor beta receptor 1 | -2.0685 | 0.0000 |
| 63340 | ENSG00000280789 | PAGR1 | PAXIP1 associated glutamate rich protein 1 | -2.0684 | 0.0000 |
| 63339 | ENSG00000204237 | OXLD1 | oxidoreductase like domain containing 1 | -2.0681 | 0.0000 |
| 63338 | ENSG00000180044 | C3orf80 | chromosome 3 open reading frame 80 | -2.0677 | 0.0000 |
| 63337 | ENSG00000233237 | LINC00472 | long intergenic non-protein coding RNA 472 | -2.0676 | 0.0000 |
| 63336 | ENSG00000250316 | ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2) pseudogene | -2.0676 | 0.0000 | |
| 63335 | ENSG00000099625 | CBARP | CACN subunit beta associated regulatory protein | -2.0675 | 0.0000 |
| 63334 | ENSG00000283829 | MIR378I | microRNA 378i | -2.0664 | 0.0000 |
| 63333 | ENSG00000232599 | odz, odd Oz/ten-m homolog 1(Drosophila) (ODZ1) pseudogene | -2.0664 | 0.0000 | |
| 63332 | ENSG00000283213 | novel transcript | -2.0662 | 0.0000 |
