Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773674
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773674
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M301
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000271111
SH3-domain binding protein 4 (SH3BP4) pseudogene
2.3219
0.0004
2
ENSG00000224539
SAGE4P
sarcoma antigen 4, pseudogene
2.0000
0.0000
3
ENSG00000225808
DNAJC19P5
DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5
2.0000
0.0000
4
ENSG00000234189
mitochondrially encoded cytochrome b (MT-CYB) pseudogene
2.0000
0.0027
5
ENSG00000234751
ribosomal protein L15 (RPL15) pseudogene
2.0000
0.0027
6
ENSG00000258394
novel transcript, sense overlapping to a novel protein
2.0000
0.0027
7
ENSG00000259324
OR11K1BP
olfactory receptor family 11 subfamily K member 1B pseudogene
2.0000
0.0000
8
ENSG00000239280
pseudogene similar to part of dihydrolipoamide branched chain transacylase E2 DBT
1.9110
0.0000
9
ENSG00000238777
RNU7-141P
RNA, U7 small nuclear 141 pseudogene
1.7925
0.0001
10
ENSG00000200635
Y RNA
1.7233
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000163950
SLBP
stem-loop binding protein
-2.0023
0.0000
63127
ENSG00000169618
PROKR1
prokineticin receptor 1
-2.0015
0.0000
63126
ENSG00000224592
MIR3659HG
MIR3659 host gene
-2.0014
0.0000
63125
ENSG00000135333
EPHA7
EPH receptor A7
-2.0013
0.0000
63124
ENSG00000219626
FAM228B
family with sequence similarity 228 member B
-2.0012
0.0000
63123
ENSG00000230798
FOXD3-AS1
FOXD3 antisense RNA 1
-2.0011
0.0000
63122
ENSG00000054148
PHPT1
phosphohistidine phosphatase 1
-2.0010
0.0000
63121
ENSG00000184900
SUMO3
small ubiquitin like modifier 3
-2.0010
0.0000
63120
ENSG00000238045
novel transcript, antisense to C16orf53 and MVP
-2.0010
0.0000
63119
ENSG00000122042
UBL3
ubiquitin like 3
-2.0010
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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