Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773674

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773674


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M301Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271111 SH3-domain binding protein 4 (SH3BP4) pseudogene 2.3219 0.0004
2 ENSG00000224539 SAGE4P sarcoma antigen 4, pseudogene 2.0000 0.0000
3 ENSG00000225808 DNAJC19P5 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5 2.0000 0.0000
4 ENSG00000234189 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.0000 0.0027
5 ENSG00000234751 ribosomal protein L15 (RPL15) pseudogene 2.0000 0.0027
6 ENSG00000258394 novel transcript, sense overlapping to a novel protein 2.0000 0.0027
7 ENSG00000259324 OR11K1BP olfactory receptor family 11 subfamily K member 1B pseudogene 2.0000 0.0000
8 ENSG00000239280 pseudogene similar to part of dihydrolipoamide branched chain transacylase E2 DBT 1.9110 0.0000
9 ENSG00000238777 RNU7-141P RNA, U7 small nuclear 141 pseudogene 1.7925 0.0001
10 ENSG00000200635 Y RNA 1.7233 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000163950 SLBP stem-loop binding protein -2.0023 0.0000
63127 ENSG00000169618 PROKR1 prokineticin receptor 1 -2.0015 0.0000
63126 ENSG00000224592 MIR3659HG MIR3659 host gene -2.0014 0.0000
63125 ENSG00000135333 EPHA7 EPH receptor A7 -2.0013 0.0000
63124 ENSG00000219626 FAM228B family with sequence similarity 228 member B -2.0012 0.0000
63123 ENSG00000230798 FOXD3-AS1 FOXD3 antisense RNA 1 -2.0011 0.0000
63122 ENSG00000054148 PHPT1 phosphohistidine phosphatase 1 -2.0010 0.0000
63121 ENSG00000184900 SUMO3 small ubiquitin like modifier 3 -2.0010 0.0000
63120 ENSG00000238045 novel transcript, antisense to C16orf53 and MVP -2.0010 0.0000
63119 ENSG00000122042 UBL3 ubiquitin like 3 -2.0010 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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