Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773675

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773675 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M302	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000188211	NCR3LG1	natural killer cell cytotoxicity receptor 3 ligand 1	2.8074	0.0000
2	ENSG00000234360		ribosomal protein S12 (RPS12) pseudogene	2.8074	0.0000
3	ENSG00000183395	PMCH	pro-melanin concentrating hormone	2.5850	0.0001
4	ENSG00000205496	OR51A2	olfactory receptor family 51 subfamily A member 2	2.5850	0.0001
5	ENSG00000267413	LINC01901	long intergenic non-protein coding RNA 1901	2.5850	0.0000
6	ENSG00000281344	HELLPAR	HELLP associated long non-coding RNA	2.5850	0.0001
7	ENSG00000224160	CICP10	capicua transcriptional repressor pseudogene 10	2.3219	0.0000
8	ENSG00000208308	SNORA40B	small nucleolar RNA, H/ACA box 40B	2.2680	0.0000
9	ENSG00000222755	RN7SKP206	RN7SK pseudogene 206	2.1887	0.0000
10	ENSG00000262271		phosphatidylinositol 4-kinase type 2 alpha (PI4K2A) pseudogene	2.1699	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000259317		SNW domain containing 1 (SNW1) pseudogene	-1.8939	0.0000
63172	ENSG00000199866		Y RNA	-1.8938	0.0000
63171	ENSG00000272849		novel transcript	-1.8934	0.0000
63170	ENSG00000124374	PAIP2B	poly(A) binding protein interacting protein 2B	-1.8931	0.0000
63169	ENSG00000241458	RPL7P19	ribosomal protein L7 pseudogene 19	-1.8928	0.0000
63168	ENSG00000283829	MIR378I	microRNA 378i	-1.8927	0.0000
63167	ENSG00000281883		novel transcript	-1.8926	0.0000
63166	ENSG00000257551	HLX-AS1	HLX antisense RNA 1	-1.8926	0.0000
63165	ENSG00000259887	FIGNL2-DT	FIGNL2 divergent transcript	-1.8924	0.0000
63164	ENSG00000227598		novel transcript	-1.8922	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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