SHOGoiN Cell Methylome: GSM2773675

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773675


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M302Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188211 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2.8074 0.0000
2 ENSG00000234360 ribosomal protein S12 (RPS12) pseudogene 2.8074 0.0000
3 ENSG00000183395 PMCH pro-melanin concentrating hormone 2.5850 0.0001
4 ENSG00000205496 OR51A2 olfactory receptor family 51 subfamily A member 2 2.5850 0.0001
5 ENSG00000267413 LINC01901 long intergenic non-protein coding RNA 1901 2.5850 0.0000
6 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 2.5850 0.0001
7 ENSG00000224160 CICP10 capicua transcriptional repressor pseudogene 10 2.3219 0.0000
8 ENSG00000208308 SNORA40B small nucleolar RNA, H/ACA box 40B 2.2680 0.0000
9 ENSG00000222755 RN7SKP206 RN7SK pseudogene 206 2.1887 0.0000
10 ENSG00000262271 phosphatidylinositol 4-kinase type 2 alpha (PI4K2A) pseudogene 2.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000172186 HMGN1P35 high mobility group nucleosome binding domain 1 pseudogene 35 -1.9480 0.0000
63340 ENSG00000005175 RPAP3 RNA polymerase II associated protein 3 -1.9479 0.0000
63339 ENSG00000183628 DGCR6 DiGeorge syndrome critical region gene 6 -1.9475 0.0000
63338 ENSG00000232368 FTLP2 ferritin light chain pseudogene 2 -1.9474 0.0000
63337 ENSG00000283805 MIR636 microRNA 636 -1.9472 0.0000
63336 ENSG00000270100 novel transcript -1.9461 0.0000
63335 ENSG00000168090 COPS6 COP9 signalosome subunit 6 -1.9455 0.0000
63334 ENSG00000168913 ENHO energy homeostasis associated -1.9454 0.0000
63333 ENSG00000276291 FRG1HP FSHD region gene 1 family member H, pseudogene -1.9453 0.0000
63332 ENSG00000145337 PYURF PIGY upstream reading frame -1.9449 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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