SHOGoiN Cell Methylome: GSM2773675
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773675 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M302 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000188211 | NCR3LG1 | natural killer cell cytotoxicity receptor 3 ligand 1 | 2.8074 | 0.0000 |
| 2 | ENSG00000234360 | ribosomal protein S12 (RPS12) pseudogene | 2.8074 | 0.0000 | |
| 3 | ENSG00000183395 | PMCH | pro-melanin concentrating hormone | 2.5850 | 0.0001 |
| 4 | ENSG00000205496 | OR51A2 | olfactory receptor family 51 subfamily A member 2 | 2.5850 | 0.0001 |
| 5 | ENSG00000267413 | LINC01901 | long intergenic non-protein coding RNA 1901 | 2.5850 | 0.0000 |
| 6 | ENSG00000281344 | HELLPAR | HELLP associated long non-coding RNA | 2.5850 | 0.0001 |
| 7 | ENSG00000224160 | CICP10 | capicua transcriptional repressor pseudogene 10 | 2.3219 | 0.0000 |
| 8 | ENSG00000208308 | SNORA40B | small nucleolar RNA, H/ACA box 40B | 2.2680 | 0.0000 |
| 9 | ENSG00000222755 | RN7SKP206 | RN7SK pseudogene 206 | 2.1887 | 0.0000 |
| 10 | ENSG00000262271 | phosphatidylinositol 4-kinase type 2 alpha (PI4K2A) pseudogene | 2.1699 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000172186 | HMGN1P35 | high mobility group nucleosome binding domain 1 pseudogene 35 | -1.9480 | 0.0000 |
| 63340 | ENSG00000005175 | RPAP3 | RNA polymerase II associated protein 3 | -1.9479 | 0.0000 |
| 63339 | ENSG00000183628 | DGCR6 | DiGeorge syndrome critical region gene 6 | -1.9475 | 0.0000 |
| 63338 | ENSG00000232368 | FTLP2 | ferritin light chain pseudogene 2 | -1.9474 | 0.0000 |
| 63337 | ENSG00000283805 | MIR636 | microRNA 636 | -1.9472 | 0.0000 |
| 63336 | ENSG00000270100 | novel transcript | -1.9461 | 0.0000 | |
| 63335 | ENSG00000168090 | COPS6 | COP9 signalosome subunit 6 | -1.9455 | 0.0000 |
| 63334 | ENSG00000168913 | ENHO | energy homeostasis associated | -1.9454 | 0.0000 |
| 63333 | ENSG00000276291 | FRG1HP | FSHD region gene 1 family member H, pseudogene | -1.9453 | 0.0000 |
| 63332 | ENSG00000145337 | PYURF | PIGY upstream reading frame | -1.9449 | 0.0000 |
