Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773675

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773675


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M302Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188211 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2.8074 0.0000
2 ENSG00000234360 ribosomal protein S12 (RPS12) pseudogene 2.8074 0.0000
3 ENSG00000183395 PMCH pro-melanin concentrating hormone 2.5850 0.0001
4 ENSG00000205496 OR51A2 olfactory receptor family 51 subfamily A member 2 2.5850 0.0001
5 ENSG00000267413 LINC01901 long intergenic non-protein coding RNA 1901 2.5850 0.0000
6 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 2.5850 0.0001
7 ENSG00000224160 CICP10 capicua transcriptional repressor pseudogene 10 2.3219 0.0000
8 ENSG00000208308 SNORA40B small nucleolar RNA, H/ACA box 40B 2.2680 0.0000
9 ENSG00000222755 RN7SKP206 RN7SK pseudogene 206 2.1887 0.0000
10 ENSG00000262271 phosphatidylinositol 4-kinase type 2 alpha (PI4K2A) pseudogene 2.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000267036 Rho GTPase activating protein 33 (ARHGAP33) pseudogene -1.9085 0.0000
63220 ENSG00000101230 ISM1 isthmin 1 -1.9084 0.0000
63219 ENSG00000162576 MXRA8 matrix remodeling associated 8 -1.9084 0.0000
63218 ENSG00000168811 IL12A interleukin 12A -1.9083 0.0000
63217 ENSG00000220205 VAMP2 vesicle associated membrane protein 2 -1.9079 0.0000
63216 ENSG00000206888 RNU6-48P RNA, U6 small nuclear 48, pseudogene -1.9079 0.0000
63215 ENSG00000274292 novel transcript -1.9077 0.0000
63214 ENSG00000277867 dexamethasone-induced transcript (DEXI) pseudogene -1.9077 0.0000
63213 ENSG00000284535 MIR6748 microRNA 6748 -1.9076 0.0000
63212 ENSG00000272854 novel transcript, antisense to BCAP29 -1.9073 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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