Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773675

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773675


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M302Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000188211 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2.8074 0.0000
2 ENSG00000234360 ribosomal protein S12 (RPS12) pseudogene 2.8074 0.0000
3 ENSG00000183395 PMCH pro-melanin concentrating hormone 2.5850 0.0001
4 ENSG00000205496 OR51A2 olfactory receptor family 51 subfamily A member 2 2.5850 0.0001
5 ENSG00000267413 LINC01901 long intergenic non-protein coding RNA 1901 2.5850 0.0000
6 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 2.5850 0.0001
7 ENSG00000224160 CICP10 capicua transcriptional repressor pseudogene 10 2.3219 0.0000
8 ENSG00000208308 SNORA40B small nucleolar RNA, H/ACA box 40B 2.2680 0.0000
9 ENSG00000222755 RN7SKP206 RN7SK pseudogene 206 2.1887 0.0000
10 ENSG00000262271 phosphatidylinositol 4-kinase type 2 alpha (PI4K2A) pseudogene 2.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259317 SNW domain containing 1 (SNW1) pseudogene -1.8939 0.0000
63172 ENSG00000199866 Y RNA -1.8938 0.0000
63171 ENSG00000272849 novel transcript -1.8934 0.0000
63170 ENSG00000124374 PAIP2B poly(A) binding protein interacting protein 2B -1.8931 0.0000
63169 ENSG00000241458 RPL7P19 ribosomal protein L7 pseudogene 19 -1.8928 0.0000
63168 ENSG00000283829 MIR378I microRNA 378i -1.8927 0.0000
63167 ENSG00000281883 novel transcript -1.8926 0.0000
63166 ENSG00000257551 HLX-AS1 HLX antisense RNA 1 -1.8926 0.0000
63165 ENSG00000259887 FIGNL2-DT FIGNL2 divergent transcript -1.8924 0.0000
63164 ENSG00000227598 novel transcript -1.8922 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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