Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773675
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773675
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M302
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000188211
NCR3LG1
natural killer cell cytotoxicity receptor 3 ligand 1
2.8074
0.0000
2
ENSG00000234360
ribosomal protein S12 (RPS12) pseudogene
2.8074
0.0000
3
ENSG00000183395
PMCH
pro-melanin concentrating hormone
2.5850
0.0001
4
ENSG00000205496
OR51A2
olfactory receptor family 51 subfamily A member 2
2.5850
0.0001
5
ENSG00000267413
LINC01901
long intergenic non-protein coding RNA 1901
2.5850
0.0000
6
ENSG00000281344
HELLPAR
HELLP associated long non-coding RNA
2.5850
0.0001
7
ENSG00000224160
CICP10
capicua transcriptional repressor pseudogene 10
2.3219
0.0000
8
ENSG00000208308
SNORA40B
small nucleolar RNA, H/ACA box 40B
2.2680
0.0000
9
ENSG00000222755
RN7SKP206
RN7SK pseudogene 206
2.1887
0.0000
10
ENSG00000262271
phosphatidylinositol 4-kinase type 2 alpha (PI4K2A) pseudogene
2.1699
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000259317
SNW domain containing 1 (SNW1) pseudogene
-1.8939
0.0000
63172
ENSG00000199866
Y RNA
-1.8938
0.0000
63171
ENSG00000272849
novel transcript
-1.8934
0.0000
63170
ENSG00000124374
PAIP2B
poly(A) binding protein interacting protein 2B
-1.8931
0.0000
63169
ENSG00000241458
RPL7P19
ribosomal protein L7 pseudogene 19
-1.8928
0.0000
63168
ENSG00000283829
MIR378I
microRNA 378i
-1.8927
0.0000
63167
ENSG00000281883
novel transcript
-1.8926
0.0000
63166
ENSG00000257551
HLX-AS1
HLX antisense RNA 1
-1.8926
0.0000
63165
ENSG00000259887
FIGNL2-DT
FIGNL2 divergent transcript
-1.8924
0.0000
63164
ENSG00000227598
novel transcript
-1.8922
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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