Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773676

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773676


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M303Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235146 novel transcript 2.5382 0.0000
2 ENSG00000109193 SULT1E1 sulfotransferase family 1E member 1 2.3219 0.0011
3 ENSG00000264564 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.3219 0.0011
4 ENSG00000280307 novel transcript 2.0763 0.0000
5 ENSG00000232968 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 2.0564 0.0000
6 ENSG00000207170 RNU6-1215P RNA, U6 small nuclear 1215, pseudogene 2.0000 0.0000
8 ENSG00000232031 novel transcript 2.0000 0.0058
9 ENSG00000235421 novel pseudogene similar to part of integrator complex subunit 4 INTS4 2.0000 0.0000
10 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.0000 0.0058
63119 ENSG00000141668 CBLN2 cerebellin 2 precursor -1.9905 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270012 novel transcript -1.9925 0.0000
63127 ENSG00000233823 novel transcript -1.9919 0.0000
63126 ENSG00000106038 EVX1 even-skipped homeobox 1 -1.9917 0.0000
63124 ENSG00000253614 novel transcript -1.9913 0.0000
63123 ENSG00000234965 SHISA8 shisa family member 8 -1.9911 0.0000
63122 ENSG00000227051 C14orf132 chromosome 14 open reading frame 132 -1.9910 0.0000
63121 ENSG00000115107 STEAP3 STEAP3 metalloreductase -1.9908 0.0000
63120 ENSG00000233586 novel pseudogene (FLJ39739) -1.9908 0.0000
63119 ENSG00000141668 CBLN2 cerebellin 2 precursor -1.9905 0.0000
10 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.0000 0.0058

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...