SHOGoiN Cell Methylome: GSM2773676

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773676


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M303Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235146 novel transcript 2.5382 0.0000
2 ENSG00000109193 SULT1E1 sulfotransferase family 1E member 1 2.3219 0.0011
3 ENSG00000264564 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.3219 0.0011
4 ENSG00000280307 novel transcript 2.0763 0.0000
5 ENSG00000232968 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 2.0564 0.0000
6 ENSG00000207170 RNU6-1215P RNA, U6 small nuclear 1215, pseudogene 2.0000 0.0000
8 ENSG00000232031 novel transcript 2.0000 0.0058
9 ENSG00000235421 novel pseudogene similar to part of integrator complex subunit 4 INTS4 2.0000 0.0000
10 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.0000 0.0058
63332 ENSG00000226534 pseudogene similar to part of sushi domain containing 2 (SUSD2) -2.0353 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000230778 ANKRD63 ankyrin repeat domain 63 -2.0378 0.0000
63340 ENSG00000228594 FNDC10 fibronectin type III domain containing 10 -2.0369 0.0000
63339 ENSG00000283538 novel transcript -2.0364 0.0000
63337 ENSG00000276723 NA -2.0364 0.0000
63336 ENSG00000272259 LINC01749 long intergenic non-protein coding RNA 1749 -2.0363 0.0000
63335 ENSG00000259863 SH3RF3-AS1 SH3RF3 antisense RNA 1 -2.0363 0.0000
63334 ENSG00000163348 PYGO2 pygopus family PHD finger 2 -2.0363 0.0000
63333 ENSG00000183644 C11orf88 chromosome 11 open reading frame 88 -2.0358 0.0000
63332 ENSG00000226534 pseudogene similar to part of sushi domain containing 2 (SUSD2) -2.0353 0.0000
10 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.0000 0.0058

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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