SHOGoiN Cell Methylome: GSM2773677

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773677


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M304Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 3.0000 0.0000
2 ENSG00000232968 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 3.0000 0.0000
3 ENSG00000199508 RNA5SP110 RNA, 5S ribosomal pseudogene 110 2.8074 0.0000
4 ENSG00000267382 glutamate decarboxylase 1-like pseudogene 2.8074 0.0000
5 ENSG00000218521 pseudogene similar to an integrin Alpha-E precursor fragment 2.5850 0.0000
6 ENSG00000244278 novel transcript 2.5850 0.0000
7 ENSG00000257896 La ribonucleoprotein domain family, member 7 (LARP7) 2.5850 0.0000
8 ENSG00000207220 RNU1-57P RNA, U1 small nuclear 57, pseudogene 2.4973 0.0000
9 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.3219 0.0002
10 ENSG00000225176 ATP5MGP4 ATP synthase membrane subunit g pseudogene 4 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000221038 RNU6ATAC7P RNA, U6atac small nuclear 7, pseudogene -2.3702 0.0000
63340 ENSG00000164403 SHROOM1 shroom family member 1 -2.3695 0.0000
63339 ENSG00000115963 RND3 Rho family GTPase 3 -2.3692 0.0000
63338 ENSG00000228485 GRK5-IT1 GRK5 intronic transcript 1 -2.3691 0.0000
63337 ENSG00000169570 DTWD2 DTW domain containing 2 -2.3665 0.0000
63336 ENSG00000254614 novel transcript, antisense to CAPN1 -2.3659 0.0000
63335 ENSG00000185610 DBX2 developing brain homeobox 2 -2.3655 0.0000
63334 ENSG00000267342 novel transcript, antisense to MRPL38 -2.3652 0.0000
63333 ENSG00000261270 novel transcript, sense intronic to HERPUD1 -2.3651 0.0000
63332 ENSG00000184599 TAFA3 TAFA chemokine like family member 3 -2.3648 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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