Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773677

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773677


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M304Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 3.0000 0.0000
2 ENSG00000232968 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 3.0000 0.0000
3 ENSG00000199508 RNA5SP110 RNA, 5S ribosomal pseudogene 110 2.8074 0.0000
4 ENSG00000267382 glutamate decarboxylase 1-like pseudogene 2.8074 0.0000
5 ENSG00000218521 pseudogene similar to an integrin Alpha-E precursor fragment 2.5850 0.0000
6 ENSG00000244278 novel transcript 2.5850 0.0000
7 ENSG00000257896 La ribonucleoprotein domain family, member 7 (LARP7) 2.5850 0.0000
8 ENSG00000207220 RNU1-57P RNA, U1 small nuclear 57, pseudogene 2.4973 0.0000
9 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.3219 0.0002
10 ENSG00000225176 ATP5MGP4 ATP synthase membrane subunit g pseudogene 4 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000136715 SAP130 Sin3A associated protein 130 -2.3059 0.0000
63127 ENSG00000180758 GPR157 G protein-coupled receptor 157 -2.3056 0.0000
63125 ENSG00000197860 SGTB small glutamine rich tetratricopeptide repeat containing beta -2.3050 0.0000
63124 ENSG00000279901 tec -2.3049 0.0000
63123 ENSG00000131187 F12 coagulation factor XII -2.3046 0.0000
63122 ENSG00000155367 PPM1J protein phosphatase, Mg2+/Mn2+ dependent 1J -2.3046 0.0000
63121 ENSG00000177685 CRACR2B calcium release activated channel regulator 2B -2.3045 0.0000
63120 ENSG00000278619 MRM1 mitochondrial rRNA methyltransferase 1 -2.3044 0.0000
63119 ENSG00000240970 RPL23AP64 ribosomal protein L23a pseudogene 64 -2.3042 0.0000
10 ENSG00000225176 ATP5MGP4 ATP synthase membrane subunit g pseudogene 4 2.3219 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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