Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773678

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773678


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M305Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265859 MIR5704 microRNA 5704 3.0971 0.0000
2 ENSG00000188831 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 2.8074 0.0000
3 ENSG00000213287 translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) pseudogene 2.8074 0.0000
4 ENSG00000261665 TUBAP4 tubulin alpha pseudogene 4 2.8074 0.0000
5 ENSG00000276137 MIR6133 microRNA 6133 2.8074 0.0000
6 ENSG00000279116 OR8D2 olfactory receptor family 8 subfamily D member 2 2.8074 0.0000
7 ENSG00000215586 FUS interacting protein (serine/arginine-rich) 1 (FUSIP1) pseudogene 2.6462 0.0000
8 ENSG00000163012 ZSWIM2 zinc finger SWIM-type containing 2 2.5850 0.0001
9 ENSG00000222343 RN7SKP139 RN7SK pseudogene 139 2.5850 0.0001
10 ENSG00000223822 EEF1A1P1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 1 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000242190 novel transcript -2.1444 0.0000
63127 ENSG00000255867 DENND5B-AS1 DENND5B antisense RNA 1 -2.1444 0.0000
63126 ENSG00000157111 TMEM171 transmembrane protein 171 -2.1444 0.0000
63125 ENSG00000268884 ribosomal protein L17 (RPL17) pseudogene -2.1443 0.0000
63124 ENSG00000248489 LINC02062 long intergenic non-protein coding RNA 2062 -2.1443 0.0000
63123 ENSG00000255251 PRR23D1 proline rich 23 domain containing 1 -2.1429 0.0173
63122 ENSG00000254543 HSPD1P2 heat shock protein family D (Hsp60) member 1 pseudogene 2 -2.1428 0.5720
63121 ENSG00000270226 interleukin 9 receptor (IL9R) pseudogene -2.1426 0.0000
63120 ENSG00000243284 VSIG8 V-set and immunoglobulin domain containing 8 -2.1426 0.0000
63119 ENSG00000141750 STAC2 SH3 and cysteine rich domain 2 -2.1423 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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