Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773678

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773678 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M305	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000265859	MIR5704	microRNA 5704	3.0971	0.0000
2	ENSG00000188831	DPPA3P2	developmental pluripotency associated 3 pseudogene 2	2.8074	0.0000
3	ENSG00000213287		translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) pseudogene	2.8074	0.0000
4	ENSG00000261665	TUBAP4	tubulin alpha pseudogene 4	2.8074	0.0000
5	ENSG00000276137	MIR6133	microRNA 6133	2.8074	0.0000
6	ENSG00000279116	OR8D2	olfactory receptor family 8 subfamily D member 2	2.8074	0.0000
7	ENSG00000215586		FUS interacting protein (serine/arginine-rich) 1 (FUSIP1) pseudogene	2.6462	0.0000
8	ENSG00000163012	ZSWIM2	zinc finger SWIM-type containing 2	2.5850	0.0001
9	ENSG00000222343	RN7SKP139	RN7SK pseudogene 139	2.5850	0.0001
10	ENSG00000223822	EEF1A1P1	eukaryotic translation elongation factor 1 alpha 1 pseudogene 1	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000242190		novel transcript	-2.1444	0.0000
63127	ENSG00000255867	DENND5B-AS1	DENND5B antisense RNA 1	-2.1444	0.0000
63126	ENSG00000157111	TMEM171	transmembrane protein 171	-2.1444	0.0000
63125	ENSG00000268884		ribosomal protein L17 (RPL17) pseudogene	-2.1443	0.0000
63124	ENSG00000248489	LINC02062	long intergenic non-protein coding RNA 2062	-2.1443	0.0000
63123	ENSG00000255251	PRR23D1	proline rich 23 domain containing 1	-2.1429	0.0173
63122	ENSG00000254543	HSPD1P2	heat shock protein family D (Hsp60) member 1 pseudogene 2	-2.1428	0.5720
63121	ENSG00000270226		interleukin 9 receptor (IL9R) pseudogene	-2.1426	0.0000
63120	ENSG00000243284	VSIG8	V-set and immunoglobulin domain containing 8	-2.1426	0.0000
63119	ENSG00000141750	STAC2	SH3 and cysteine rich domain 2	-2.1423	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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