SHOGoiN Cell Methylome: GSM2773678
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773678 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M305 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000265859 | MIR5704 | microRNA 5704 | 3.0971 | 0.0000 |
| 2 | ENSG00000188831 | DPPA3P2 | developmental pluripotency associated 3 pseudogene 2 | 2.8074 | 0.0000 |
| 3 | ENSG00000213287 | translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) pseudogene | 2.8074 | 0.0000 | |
| 4 | ENSG00000261665 | TUBAP4 | tubulin alpha pseudogene 4 | 2.8074 | 0.0000 |
| 5 | ENSG00000276137 | MIR6133 | microRNA 6133 | 2.8074 | 0.0000 |
| 6 | ENSG00000279116 | OR8D2 | olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) | 2.8074 | 0.0000 |
| 7 | ENSG00000215586 | FUS interacting protein (serine/arginine-rich) 1 (FUSIP1) pseudogene | 2.6462 | 0.0000 | |
| 8 | ENSG00000163012 | ZSWIM2 | zinc finger SWIM-type containing 2 | 2.5850 | 0.0001 |
| 9 | ENSG00000222343 | RN7SKP139 | RN7SK pseudogene 139 | 2.5850 | 0.0001 |
| 10 | ENSG00000223822 | EEF1A1P1 | eukaryotic translation elongation factor 1 alpha 1 pseudogene 1 | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000268555 | novel transcript | -2.2069 | 0.0000 | |
| 63340 | ENSG00000166351 | POTED | POTE ankyrin domain family member D | -2.2066 | 0.0000 |
| 63339 | ENSG00000253186 | coiled-coil domain containing 144 (CCDC144) pseudogene | -2.2065 | 0.0000 | |
| 63338 | ENSG00000230508 | RPL19P21 | ribosomal protein L19 pseudogene 21 | -2.2064 | 0.0000 |
| 63337 | ENSG00000242137 | RPL11P5 | ribosomal protein L11 pseudogene 5 | -2.2058 | 0.0000 |
| 63336 | ENSG00000236875 | DDX11L5 | DEAD/H-box helicase 11 like 5 | -2.2055 | 0.0000 |
| 63335 | ENSG00000186493 | C5orf38 | chromosome 5 open reading frame 38 | -2.2054 | 0.0000 |
| 63334 | ENSG00000275538 | RNVU1-19 | RNA, variant U1 small nuclear 19 | -2.2049 | 0.0000 |
| 63333 | ENSG00000201183 | RNVU1-3 | RNA, variant U1 small nuclear 3 | -2.2048 | 0.0000 |
| 63332 | ENSG00000214195 | HMGN2P31 | high mobility group nucleosomal binding domain 2 pseudogene 31 | -2.2045 | 0.0000 |
