Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773678
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773678
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M305
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000265859
MIR5704
microRNA 5704
3.0971
0.0000
2
ENSG00000188831
DPPA3P2
developmental pluripotency associated 3 pseudogene 2
2.8074
0.0000
3
ENSG00000213287
translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) pseudogene
2.8074
0.0000
4
ENSG00000261665
TUBAP4
tubulin alpha pseudogene 4
2.8074
0.0000
5
ENSG00000276137
MIR6133
microRNA 6133
2.8074
0.0000
6
ENSG00000279116
OR8D2
olfactory receptor family 8 subfamily D member 2
2.8074
0.0000
7
ENSG00000215586
FUS interacting protein (serine/arginine-rich) 1 (FUSIP1) pseudogene
2.6462
0.0000
8
ENSG00000163012
ZSWIM2
zinc finger SWIM-type containing 2
2.5850
0.0001
9
ENSG00000222343
RN7SKP139
RN7SK pseudogene 139
2.5850
0.0001
10
ENSG00000223822
EEF1A1P1
eukaryotic translation elongation factor 1 alpha 1 pseudogene 1
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000242190
novel transcript
-2.1444
0.0000
63127
ENSG00000255867
DENND5B-AS1
DENND5B antisense RNA 1
-2.1444
0.0000
63126
ENSG00000157111
TMEM171
transmembrane protein 171
-2.1444
0.0000
63125
ENSG00000268884
ribosomal protein L17 (RPL17) pseudogene
-2.1443
0.0000
63124
ENSG00000248489
LINC02062
long intergenic non-protein coding RNA 2062
-2.1443
0.0000
63123
ENSG00000255251
PRR23D1
proline rich 23 domain containing 1
-2.1429
0.0173
63122
ENSG00000254543
HSPD1P2
heat shock protein family D (Hsp60) member 1 pseudogene 2
-2.1428
0.5720
63121
ENSG00000270226
interleukin 9 receptor (IL9R) pseudogene
-2.1426
0.0000
63120
ENSG00000243284
VSIG8
V-set and immunoglobulin domain containing 8
-2.1426
0.0000
63119
ENSG00000141750
STAC2
SH3 and cysteine rich domain 2
-2.1423
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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