SHOGoiN Cell Methylome: GSM2773678

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773678


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M305Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265859 MIR5704 microRNA 5704 3.0971 0.0000
2 ENSG00000188831 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 2.8074 0.0000
3 ENSG00000213287 translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) pseudogene 2.8074 0.0000
4 ENSG00000261665 TUBAP4 tubulin alpha pseudogene 4 2.8074 0.0000
5 ENSG00000276137 MIR6133 microRNA 6133 2.8074 0.0000
6 ENSG00000279116 OR8D2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) 2.8074 0.0000
7 ENSG00000215586 FUS interacting protein (serine/arginine-rich) 1 (FUSIP1) pseudogene 2.6462 0.0000
8 ENSG00000163012 ZSWIM2 zinc finger SWIM-type containing 2 2.5850 0.0001
9 ENSG00000222343 RN7SKP139 RN7SK pseudogene 139 2.5850 0.0001
10 ENSG00000223822 EEF1A1P1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 1 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000268555 novel transcript -2.2069 0.0000
63340 ENSG00000166351 POTED POTE ankyrin domain family member D -2.2066 0.0000
63339 ENSG00000253186 coiled-coil domain containing 144 (CCDC144) pseudogene -2.2065 0.0000
63338 ENSG00000230508 RPL19P21 ribosomal protein L19 pseudogene 21 -2.2064 0.0000
63337 ENSG00000242137 RPL11P5 ribosomal protein L11 pseudogene 5 -2.2058 0.0000
63336 ENSG00000236875 DDX11L5 DEAD/H-box helicase 11 like 5 -2.2055 0.0000
63335 ENSG00000186493 C5orf38 chromosome 5 open reading frame 38 -2.2054 0.0000
63334 ENSG00000275538 RNVU1-19 RNA, variant U1 small nuclear 19 -2.2049 0.0000
63333 ENSG00000201183 RNVU1-3 RNA, variant U1 small nuclear 3 -2.2048 0.0000
63332 ENSG00000214195 HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 -2.2045 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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