Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773679

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773679 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M306	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000226307	HNRNPDLP1	HNRNPDL pseudogene 1	2.0000	0.0023
2	ENSG00000235105		amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene	1.8386	0.0000
3	ENSG00000274570	SPDYE10P	speedy/RINGO cell cycle regulator family member E10, pseudogene	1.6356	0.0000
4	ENSG00000222225	RNU6-447P	RNA, U6 small nuclear 447, pseudogene	1.5850	0.0000
5	ENSG00000223941	LINC01014	long intergenic non-protein coding RNA 1014	1.5850	0.0000
6	ENSG00000225263	PCDH9-AS3	PCDH9 antisense RNA 3	1.5850	0.0173
7	ENSG00000230768	LINC01676	long intergenic non-protein coding RNA 1676	1.5850	0.0173
8	ENSG00000271157		adenosine deaminase, RNA-specific, B1 (ADARB1) pseudogene	1.5850	0.0173
9	ENSG00000275163		potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript)	1.5850	0.0000
10	ENSG00000253001	RN7SKP105	RN7SK pseudogene 105	1.5000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000279369		TEC	-1.6256	0.0000
63127	ENSG00000148291	SURF2	surfeit 2	-1.6255	0.0000
63126	ENSG00000221953	C1orf229	chromosome 1 open reading frame 229	-1.6255	0.0000
63125	ENSG00000263843	MIF4GD-DT	MIF4GD divergent transcript	-1.6255	0.0000
63124	ENSG00000166407	LMO1	LIM domain only 1	-1.6254	0.0000
63123	ENSG00000165140	FBP1	fructose-bisphosphatase 1	-1.6254	0.0000
63122	ENSG00000189114	BLOC1S3	biogenesis of lysosomal organelles complex 1 subunit 3	-1.6252	0.0000
63121	ENSG00000197858	GPAA1	glycosylphosphatidylinositol anchor attachment 1	-1.6250	0.0000
63120	ENSG00000174807	CD248	CD248 molecule	-1.6247	0.0000
63119	ENSG00000265874	MIR4489	microRNA 4489	-1.6246	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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