SHOGoiN Cell Methylome: GSM2773679
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773679 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M306 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000226307 | HNRNPDLP1 | HNRNPDL pseudogene 1 | 2.0000 | 0.0023 |
| 2 | ENSG00000235105 | amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene | 1.8386 | 0.0000 | |
| 3 | ENSG00000274570 | SPDYE10P | speedy/RINGO cell cycle regulator family member E10, pseudogene | 1.6356 | 0.0000 |
| 4 | ENSG00000222225 | RNU6-447P | RNA, U6 small nuclear 447, pseudogene | 1.5850 | 0.0000 |
| 5 | ENSG00000223941 | LINC01014 | long intergenic non-protein coding RNA 1014 | 1.5850 | 0.0000 |
| 6 | ENSG00000225263 | PCDH9-AS3 | PCDH9 antisense RNA 3 | 1.5850 | 0.0173 |
| 7 | ENSG00000230768 | LINC01676 | long intergenic non-protein coding RNA 1676 | 1.5850 | 0.0173 |
| 8 | ENSG00000271157 | adenosine deaminase, RNA-specific, B1 (ADARB1) pseudogene | 1.5850 | 0.0173 | |
| 9 | ENSG00000275163 | potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) | 1.5850 | 0.0000 | |
| 10 | ENSG00000253001 | RN7SKP105 | RN7SK pseudogene 105 | 1.5000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000018869 | ZNF582 | zinc finger protein 582 | -1.6641 | 0.0000 |
| 63340 | ENSG00000259327 | novel transcript | -1.6640 | 0.0000 | |
| 63339 | ENSG00000186919 | ZACN | zinc activated ion channel | -1.6637 | 0.0000 |
| 63338 | ENSG00000275741 | novel transcript, antisense to IRS2 | -1.6636 | 0.0000 | |
| 63337 | ENSG00000183807 | FAM162B | family with sequence similarity 162 member B | -1.6635 | 0.0000 |
| 63336 | ENSG00000025708 | TYMP | thymidine phosphorylase | -1.6633 | 0.0000 |
| 63335 | ENSG00000270021 | novel transcript, antisense to H2AFY | -1.6632 | 0.0000 | |
| 63334 | ENSG00000179862 | CITED4 | Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 | -1.6630 | 0.0000 |
| 63333 | ENSG00000201852 | RNU6-702P | RNA, U6 small nuclear 702, pseudogene | -1.6627 | 0.0000 |
| 63332 | ENSG00000266718 | novel transcript, antisense MYO1D | -1.6623 | 0.0000 |
