Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773679

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773679


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M306Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226307 HNRNPDLP1 HNRNPDL pseudogene 1 2.0000 0.0023
2 ENSG00000235105 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene 1.8386 0.0000
3 ENSG00000274570 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene 1.6356 0.0000
4 ENSG00000222225 RNU6-447P RNA, U6 small nuclear 447, pseudogene 1.5850 0.0000
5 ENSG00000223941 LINC01014 long intergenic non-protein coding RNA 1014 1.5850 0.0000
6 ENSG00000225263 PCDH9-AS3 PCDH9 antisense RNA 3 1.5850 0.0173
7 ENSG00000230768 LINC01676 long intergenic non-protein coding RNA 1676 1.5850 0.0173
8 ENSG00000271157 adenosine deaminase, RNA-specific, B1 (ADARB1) pseudogene 1.5850 0.0173
9 ENSG00000275163 potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) 1.5850 0.0000
10 ENSG00000253001 RN7SKP105 RN7SK pseudogene 105 1.5000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000279369 TEC -1.6256 0.0000
63127 ENSG00000148291 SURF2 surfeit 2 -1.6255 0.0000
63126 ENSG00000221953 C1orf229 chromosome 1 open reading frame 229 -1.6255 0.0000
63125 ENSG00000263843 MIF4GD-DT MIF4GD divergent transcript -1.6255 0.0000
63124 ENSG00000166407 LMO1 LIM domain only 1 -1.6254 0.0000
63123 ENSG00000165140 FBP1 fructose-bisphosphatase 1 -1.6254 0.0000
63122 ENSG00000189114 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 -1.6252 0.0000
63121 ENSG00000197858 GPAA1 glycosylphosphatidylinositol anchor attachment 1 -1.6250 0.0000
63120 ENSG00000174807 CD248 CD248 molecule -1.6247 0.0000
63119 ENSG00000265874 MIR4489 microRNA 4489 -1.6246 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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