SHOGoiN Cell Methylome: GSM2773679

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773679


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M306Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226307 HNRNPDLP1 HNRNPDL pseudogene 1 2.0000 0.0023
2 ENSG00000235105 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene 1.8386 0.0000
3 ENSG00000274570 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene 1.6356 0.0000
4 ENSG00000222225 RNU6-447P RNA, U6 small nuclear 447, pseudogene 1.5850 0.0000
5 ENSG00000223941 LINC01014 long intergenic non-protein coding RNA 1014 1.5850 0.0000
6 ENSG00000225263 PCDH9-AS3 PCDH9 antisense RNA 3 1.5850 0.0173
7 ENSG00000230768 LINC01676 long intergenic non-protein coding RNA 1676 1.5850 0.0173
8 ENSG00000271157 adenosine deaminase, RNA-specific, B1 (ADARB1) pseudogene 1.5850 0.0173
9 ENSG00000275163 potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) 1.5850 0.0000
10 ENSG00000253001 RN7SKP105 RN7SK pseudogene 105 1.5000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000018869 ZNF582 zinc finger protein 582 -1.6641 0.0000
63340 ENSG00000259327 novel transcript -1.6640 0.0000
63339 ENSG00000186919 ZACN zinc activated ion channel -1.6637 0.0000
63338 ENSG00000275741 novel transcript, antisense to IRS2 -1.6636 0.0000
63337 ENSG00000183807 FAM162B family with sequence similarity 162 member B -1.6635 0.0000
63336 ENSG00000025708 TYMP thymidine phosphorylase -1.6633 0.0000
63335 ENSG00000270021 novel transcript, antisense to H2AFY -1.6632 0.0000
63334 ENSG00000179862 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 -1.6630 0.0000
63333 ENSG00000201852 RNU6-702P RNA, U6 small nuclear 702, pseudogene -1.6627 0.0000
63332 ENSG00000266718 novel transcript, antisense MYO1D -1.6623 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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