Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773679
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773679
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M306
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000226307
HNRNPDLP1
HNRNPDL pseudogene 1
2.0000
0.0023
2
ENSG00000235105
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene
1.8386
0.0000
3
ENSG00000274570
SPDYE10P
speedy/RINGO cell cycle regulator family member E10, pseudogene
1.6356
0.0000
4
ENSG00000222225
RNU6-447P
RNA, U6 small nuclear 447, pseudogene
1.5850
0.0000
5
ENSG00000223941
LINC01014
long intergenic non-protein coding RNA 1014
1.5850
0.0000
6
ENSG00000225263
PCDH9-AS3
PCDH9 antisense RNA 3
1.5850
0.0173
7
ENSG00000230768
LINC01676
long intergenic non-protein coding RNA 1676
1.5850
0.0173
8
ENSG00000271157
adenosine deaminase, RNA-specific, B1 (ADARB1) pseudogene
1.5850
0.0173
9
ENSG00000275163
potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript)
1.5850
0.0000
10
ENSG00000253001
RN7SKP105
RN7SK pseudogene 105
1.5000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000279369
TEC
-1.6256
0.0000
63127
ENSG00000148291
SURF2
surfeit 2
-1.6255
0.0000
63126
ENSG00000221953
C1orf229
chromosome 1 open reading frame 229
-1.6255
0.0000
63125
ENSG00000263843
MIF4GD-DT
MIF4GD divergent transcript
-1.6255
0.0000
63124
ENSG00000166407
LMO1
LIM domain only 1
-1.6254
0.0000
63123
ENSG00000165140
FBP1
fructose-bisphosphatase 1
-1.6254
0.0000
63122
ENSG00000189114
BLOC1S3
biogenesis of lysosomal organelles complex 1 subunit 3
-1.6252
0.0000
63121
ENSG00000197858
GPAA1
glycosylphosphatidylinositol anchor attachment 1
-1.6250
0.0000
63120
ENSG00000174807
CD248
CD248 molecule
-1.6247
0.0000
63119
ENSG00000265874
MIR4489
microRNA 4489
-1.6246
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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