Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773680

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773680


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M307Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000238529 RNU6-599P RNA, U6 small nuclear 599, pseudogene 2.0000 0.0030
2 ENSG00000235221 LINC00383 long intergenic non-protein coding RNA 383 1.5850 0.0208
3 ENSG00000251175 GSTCD-AS1 GSTCD antisense RNA 1 1.4462 0.0000
4 ENSG00000224698 novel transcript 1.4387 0.0000
5 ENSG00000217067 ribosomal protein S17 (RPS17) pseudogene 1.4308 0.0000
6 ENSG00000212211 Small nucleolar RNA U3 1.4036 0.0000
7 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 1.3585 0.0000
8 ENSG00000248979 LAMTOR3P2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2 1.3504 0.0000
9 ENSG00000242318 ribosomal protein L21 (RPL21) pseudogene 1.2925 0.0030
10 ENSG00000255418 LINC02718 long intergenic non-protein coding RNA 2718 1.2925 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000260473 novel transcript -1.7874 0.0000
63127 ENSG00000186480 INSIG1 insulin induced gene 1 -1.7871 0.0000
63126 ENSG00000248347 POTE ankyrin domain family pseudogene -1.7871 0.0000
63125 ENSG00000259132 novel protein -1.7870 0.0000
63124 ENSG00000127418 FGFRL1 fibroblast growth factor receptor like 1 -1.7866 0.0000
63123 ENSG00000271646 IRF2-DT IRF2 divergent transcript -1.7862 0.0000
63122 ENSG00000173930 SLCO4C1 solute carrier organic anion transporter family member 4C1 -1.7861 0.0000
63121 ENSG00000176076 KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 -1.7859 0.0000
63120 ENSG00000179751 SYCN syncollin -1.7859 0.0000
63119 ENSG00000242082 SLC5A4-AS1 SLC5A4 antisense RNA 1 -1.7858 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...