SHOGoiN Cell Methylome: GSM2773680

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773680


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M307Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000238529 RNU6-599P RNA, U6 small nuclear 599, pseudogene 2.0000 0.0030
2 ENSG00000235221 LINC00383 long intergenic non-protein coding RNA 383 1.5850 0.0208
3 ENSG00000251175 novel transcript 1.4462 0.0000
4 ENSG00000224698 novel transcript 1.4387 0.0000
5 ENSG00000217067 ribosomal protein S17 (RPS17) pseudogene 1.4308 0.0000
6 ENSG00000212211 NA 1.4036 0.0000
7 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 1.3585 0.0000
8 ENSG00000248979 LAMTOR3P2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2 1.3504 0.0000
9 ENSG00000242318 ribosomal protein L21 (RPL21) pseudogene 1.2925 0.0030
10 ENSG00000255418 novel transcript 1.2925 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000166595 CIAO2B cytosolic iron-sulfur assembly component 2B -1.8354 0.0000
63340 ENSG00000274322 novel protein -1.8349 0.0000
63339 ENSG00000249158 PCDHA11 protocadherin alpha 11 -1.8349 0.0000
63338 ENSG00000196453 ZNF777 zinc finger protein 777 -1.8348 0.0000
63337 ENSG00000254402 LRRC24 leucine rich repeat containing 24 -1.8343 0.0000
63336 ENSG00000275092 novel transcript, sense intronic to MAPK8IP3 -1.8340 0.0000
63335 ENSG00000135722 FBXL8 F-box and leucine rich repeat protein 8 -1.8339 0.0000
63334 ENSG00000266124 MIR5587 microRNA 5587 -1.8336 0.0000
63333 ENSG00000273596 NA -1.8331 0.0000
63332 ENSG00000261592 novel transcript, antisense to MAP1LC3B -1.8331 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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