Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773681
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773681
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M308
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000130538
OR11H1
olfactory receptor family 11 subfamily H member 1
3.4594
0.0000
2
ENSG00000231388
FMN2P1
FMN2 pseudogene 1
3.4594
0.0000
3
ENSG00000242121
RN7SL267P
RNA, 7SL, cytoplasmic 267, pseudogene
3.4594
0.0000
4
ENSG00000249065
PCNAP1
proliferating cell nuclear antigen pseudogene 1
3.3219
0.0000
5
ENSG00000174325
DIRC1
disrupted in renal carcinoma 1
3.1699
0.0000
6
ENSG00000258506
ribosomal protein L13a (RPL13A) pseudogene
3.1699
0.0000
7
ENSG00000264705
novel transcript
3.1699
0.0000
8
ENSG00000260975
novel transcript
3.1144
0.0000
9
ENSG00000232458
LINC01450
long intergenic non-protein coding RNA 1450
3.0000
0.0000
10
ENSG00000272316
novel transcript
3.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000176798
OR51L1
olfactory receptor family 51 subfamily L member 1
-2.4387
0.0578
63127
ENSG00000270542
heat-responsive protein 12 (HRSP12) pseudogene
-2.4382
0.0000
63126
ENSG00000146215
CRIP3
cysteine rich protein 3
-2.4377
0.0000
63125
ENSG00000259075
POC1B-GALNT4
POC1B-GALNT4 readthrough
-2.4365
0.0000
63124
ENSG00000164972
C9orf24
chromosome 9 open reading frame 24
-2.4364
0.0000
63123
ENSG00000261044
novel transcript, antisense to ARC
-2.4362
0.0000
63122
ENSG00000239967
OR2A41P
olfactory receptor family 2 subfamily A member 41 pseudogene
-2.4361
0.0004
63121
ENSG00000235016
SEMA3F-AS1
SEMA3F antisense RNA 1
-2.4359
0.0000
63120
ENSG00000135736
CCDC102A
coiled-coil domain containing 102A
-2.4349
0.0000
63119
ENSG00000267695
novel transcript
-2.4347
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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