SHOGoiN Cell Methylome: GSM2773681
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773681 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M308 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000130538 | OR11H1 | olfactory receptor family 11 subfamily H member 1 | 3.4594 | 0.0000 |
| 2 | ENSG00000231388 | formin 2 (FMN2) pseudogene | 3.4594 | 0.0000 | |
| 3 | ENSG00000242121 | RN7SL267P | RNA, 7SL, cytoplasmic 267, pseudogene | 3.4594 | 0.0000 |
| 4 | ENSG00000249065 | PCNAP1 | proliferating cell nuclear antigen pseudogene 1 | 3.3219 | 0.0000 |
| 5 | ENSG00000174325 | DIRC1 | disrupted in renal carcinoma 1 | 3.1699 | 0.0000 |
| 6 | ENSG00000258506 | ribosomal protein L13a (RPL13A) pseudogene | 3.1699 | 0.0000 | |
| 7 | ENSG00000264705 | novel transcript | 3.1699 | 0.0000 | |
| 8 | ENSG00000260975 | novel transcript | 3.1144 | 0.0000 | |
| 9 | ENSG00000232458 | LINC01450 | long intergenic non-protein coding RNA 1450 | 3.0000 | 0.0000 |
| 10 | ENSG00000272316 | novel transcript | 3.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000178980 | SELENOW | selenoprotein W | -2.5301 | 0.0000 |
| 63340 | ENSG00000251604 | LINC01385 | long intergenic non-protein coding RNA 1385 | -2.5298 | 0.0000 |
| 63339 | ENSG00000222303 | RNU6-935P | RNA, U6 small nuclear 935, pseudogene | -2.5291 | 0.0000 |
| 63338 | ENSG00000072849 | DERL2 | derlin 2 | -2.5285 | 0.0000 |
| 63337 | ENSG00000272265 | novel transcript | -2.5283 | 0.0039 | |
| 63336 | ENSG00000259993 | hyperpolarization activated cyclic nucleotide-gated potassium channel 2 (HCN2) pseudogene | -2.5283 | 0.0925 | |
| 63335 | ENSG00000156096 | UGT2B4 | UDP glucuronosyltransferase family 2 member B4 | -2.5283 | 0.0039 |
| 63334 | ENSG00000138400 | MDH1B | malate dehydrogenase 1B | -2.5283 | 0.0925 |
| 63333 | ENSG00000274718 | novel transcript | -2.5282 | 0.0000 | |
| 63332 | ENSG00000184160 | ADRA2C | adrenoceptor alpha 2C | -2.5274 | 0.0000 |
