Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773681

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773681


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M308Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000130538 OR11H1 olfactory receptor family 11 subfamily H member 1 3.4594 0.0000
2 ENSG00000231388 FMN2P1 FMN2 pseudogene 1 3.4594 0.0000
3 ENSG00000242121 RN7SL267P RNA, 7SL, cytoplasmic 267, pseudogene 3.4594 0.0000
4 ENSG00000249065 PCNAP1 proliferating cell nuclear antigen pseudogene 1 3.3219 0.0000
5 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 3.1699 0.0000
6 ENSG00000258506 ribosomal protein L13a (RPL13A) pseudogene 3.1699 0.0000
7 ENSG00000264705 novel transcript 3.1699 0.0000
8 ENSG00000260975 novel transcript 3.1144 0.0000
9 ENSG00000232458 LINC01450 long intergenic non-protein coding RNA 1450 3.0000 0.0000
10 ENSG00000272316 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000176798 OR51L1 olfactory receptor family 51 subfamily L member 1 -2.4387 0.0578
63127 ENSG00000270542 heat-responsive protein 12 (HRSP12) pseudogene -2.4382 0.0000
63126 ENSG00000146215 CRIP3 cysteine rich protein 3 -2.4377 0.0000
63125 ENSG00000259075 POC1B-GALNT4 POC1B-GALNT4 readthrough -2.4365 0.0000
63124 ENSG00000164972 C9orf24 chromosome 9 open reading frame 24 -2.4364 0.0000
63123 ENSG00000261044 novel transcript, antisense to ARC -2.4362 0.0000
63122 ENSG00000239967 OR2A41P olfactory receptor family 2 subfamily A member 41 pseudogene -2.4361 0.0004
63121 ENSG00000235016 SEMA3F-AS1 SEMA3F antisense RNA 1 -2.4359 0.0000
63120 ENSG00000135736 CCDC102A coiled-coil domain containing 102A -2.4349 0.0000
63119 ENSG00000267695 novel transcript -2.4347 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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