SHOGoiN Cell Methylome: GSM2773682

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773682


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M309Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250927 MESTP3 mesoderm specific transcript pseudogene 3 2.5850 0.0001
2 ENSG00000270516 cereblon, pseudogene 2.5850 0.0000
3 ENSG00000204361 NXPE2 neurexophilin and PC-esterase domain family member 2 2.3219 0.0004
4 ENSG00000224695 MTND6P7 MT-ND6 pseudogene 7 2.3219 0.0000
5 ENSG00000227789 MTCYBP7 MT-CYB pseudogene 7 2.3219 0.0000
6 ENSG00000249226 SUCLG2P4 succinate-CoA ligase GDP-forming beta subunit pseudogene 4 2.3219 0.0004
7 ENSG00000252479 RNA5SP309 RNA, 5S ribosomal pseudogene 309 2.3219 0.0000
8 ENSG00000241804 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene 2.1962 0.0000
9 ENSG00000228568 ribosomal protein S15a (RPS15A) pseudogene 2.1073 0.0000
10 ENSG00000199051 MIR361 microRNA 361 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000257327 novel transcript -2.0036 0.0000
63340 ENSG00000258724 PINX1 PIN2 (TERF1) interacting telomerase inhibitor 1 -2.0028 0.0000
63339 ENSG00000185915 KLHL34 kelch like family member 34 -2.0027 0.0000
63338 ENSG00000263697 MIR3621 microRNA 3621 -2.0025 0.0000
63337 ENSG00000249459 ZNF286B zinc finger protein 286B (pseudogene) -2.0025 0.0000
63336 ENSG00000278901 novel transcript, antisense to PCDHA13 -2.0022 0.0000
63335 ENSG00000237338 FTCD-AS1 FTCD antisense RNA 1 -2.0018 0.0000
63334 ENSG00000145545 SRD5A1 steroid 5 alpha-reductase 1 -2.0008 0.0000
63333 ENSG00000185090 MANEAL mannosidase endo-alpha like -2.0006 0.0000
63332 ENSG00000259956 RBM15B RNA binding motif protein 15B -2.0005 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...