Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773682

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773682


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M309Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250927 MESTP3 mesoderm specific transcript pseudogene 3 2.5850 0.0001
2 ENSG00000270516 cereblon, pseudogene 2.5850 0.0000
3 ENSG00000204361 NXPE2 neurexophilin and PC-esterase domain family member 2 2.3219 0.0004
4 ENSG00000224695 MTND6P7 MT-ND6 pseudogene 7 2.3219 0.0000
5 ENSG00000227789 MTCYBP7 MT-CYB pseudogene 7 2.3219 0.0000
6 ENSG00000249226 SUCLG2P4 SUCLG2 pseudogene 4 2.3219 0.0004
7 ENSG00000252479 RNA5SP309 RNA, 5S ribosomal pseudogene 309 2.3219 0.0000
8 ENSG00000241804 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene 2.1962 0.0000
9 ENSG00000228568 RPS15AP13 ribosomal protein S15a pseudogene 13 2.1073 0.0000
10 ENSG00000199051 MIR361 microRNA 361 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000149451 ADAM33 ADAM metallopeptidase domain 33 -1.9490 0.0000
63127 ENSG00000174721 FGFBP3 fibroblast growth factor binding protein 3 -1.9489 0.0000
63126 ENSG00000141750 STAC2 SH3 and cysteine rich domain 2 -1.9489 0.0000
63125 ENSG00000095739 BAMBI BMP and activin membrane bound inhibitor -1.9487 0.0000
63124 ENSG00000225761 novel transcript -1.9485 0.0000
63123 ENSG00000270816 LINC00221 long intergenic non-protein coding RNA 221 -1.9482 0.0000
63122 ENSG00000204347 BTBD17 BTB domain containing 17 -1.9482 0.0000
63120 ENSG00000236336 CDYL-AS1 CDYL antisense RNA 1 -1.9477 0.0000
63119 ENSG00000133477 FAM83F family with sequence similarity 83 member F -1.9471 0.0000
10 ENSG00000199051 MIR361 microRNA 361 2.0000 0.0029

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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