Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773682

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773682 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M309	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000250927	MESTP3	mesoderm specific transcript pseudogene 3	2.5850	0.0001
2	ENSG00000270516		cereblon, pseudogene	2.5850	0.0000
3	ENSG00000204361	NXPE2	neurexophilin and PC-esterase domain family member 2	2.3219	0.0004
4	ENSG00000224695	MTND6P7	MT-ND6 pseudogene 7	2.3219	0.0000
5	ENSG00000227789	MTCYBP7	MT-CYB pseudogene 7	2.3219	0.0000
6	ENSG00000249226	SUCLG2P4	SUCLG2 pseudogene 4	2.3219	0.0004
7	ENSG00000252479	RNA5SP309	RNA, 5S ribosomal pseudogene 309	2.3219	0.0000
8	ENSG00000241804		small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene	2.1962	0.0000
9	ENSG00000228568	RPS15AP13	ribosomal protein S15a pseudogene 13	2.1073	0.0000
10	ENSG00000199051	MIR361	microRNA 361	2.0000	0.0029

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000149451	ADAM33	ADAM metallopeptidase domain 33	-1.9490	0.0000
63127	ENSG00000174721	FGFBP3	fibroblast growth factor binding protein 3	-1.9489	0.0000
63126	ENSG00000141750	STAC2	SH3 and cysteine rich domain 2	-1.9489	0.0000
63125	ENSG00000095739	BAMBI	BMP and activin membrane bound inhibitor	-1.9487	0.0000
63124	ENSG00000225761		novel transcript	-1.9485	0.0000
63123	ENSG00000270816	LINC00221	long intergenic non-protein coding RNA 221	-1.9482	0.0000
63122	ENSG00000204347	BTBD17	BTB domain containing 17	-1.9482	0.0000
63120	ENSG00000236336	CDYL-AS1	CDYL antisense RNA 1	-1.9477	0.0000
63119	ENSG00000133477	FAM83F	family with sequence similarity 83 member F	-1.9471	0.0000
10	ENSG00000199051	MIR361	microRNA 361	2.0000	0.0029

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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