Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773682
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773682
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M309
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000250927
MESTP3
mesoderm specific transcript pseudogene 3
2.5850
0.0001
2
ENSG00000270516
cereblon, pseudogene
2.5850
0.0000
3
ENSG00000204361
NXPE2
neurexophilin and PC-esterase domain family member 2
2.3219
0.0004
4
ENSG00000224695
MTND6P7
MT-ND6 pseudogene 7
2.3219
0.0000
5
ENSG00000227789
MTCYBP7
MT-CYB pseudogene 7
2.3219
0.0000
6
ENSG00000249226
SUCLG2P4
SUCLG2 pseudogene 4
2.3219
0.0004
7
ENSG00000252479
RNA5SP309
RNA, 5S ribosomal pseudogene 309
2.3219
0.0000
8
ENSG00000241804
small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene
2.1962
0.0000
9
ENSG00000228568
RPS15AP13
ribosomal protein S15a pseudogene 13
2.1073
0.0000
10
ENSG00000199051
MIR361
microRNA 361
2.0000
0.0029
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000149451
ADAM33
ADAM metallopeptidase domain 33
-1.9490
0.0000
63127
ENSG00000174721
FGFBP3
fibroblast growth factor binding protein 3
-1.9489
0.0000
63126
ENSG00000141750
STAC2
SH3 and cysteine rich domain 2
-1.9489
0.0000
63125
ENSG00000095739
BAMBI
BMP and activin membrane bound inhibitor
-1.9487
0.0000
63124
ENSG00000225761
novel transcript
-1.9485
0.0000
63123
ENSG00000270816
LINC00221
long intergenic non-protein coding RNA 221
-1.9482
0.0000
63122
ENSG00000204347
BTBD17
BTB domain containing 17
-1.9482
0.0000
63120
ENSG00000236336
CDYL-AS1
CDYL antisense RNA 1
-1.9477
0.0000
63119
ENSG00000133477
FAM83F
family with sequence similarity 83 member F
-1.9471
0.0000
10
ENSG00000199051
MIR361
microRNA 361
2.0000
0.0029
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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