SHOGoiN Cell Methylome: GSM2773682
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773682 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M309 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000250927 | MESTP3 | mesoderm specific transcript pseudogene 3 | 2.5850 | 0.0001 |
| 2 | ENSG00000270516 | cereblon, pseudogene | 2.5850 | 0.0000 | |
| 3 | ENSG00000204361 | NXPE2 | neurexophilin and PC-esterase domain family member 2 | 2.3219 | 0.0004 |
| 4 | ENSG00000224695 | MTND6P7 | MT-ND6 pseudogene 7 | 2.3219 | 0.0000 |
| 5 | ENSG00000227789 | MTCYBP7 | MT-CYB pseudogene 7 | 2.3219 | 0.0000 |
| 6 | ENSG00000249226 | SUCLG2P4 | succinate-CoA ligase GDP-forming beta subunit pseudogene 4 | 2.3219 | 0.0004 |
| 7 | ENSG00000252479 | RNA5SP309 | RNA, 5S ribosomal pseudogene 309 | 2.3219 | 0.0000 |
| 8 | ENSG00000241804 | small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene | 2.1962 | 0.0000 | |
| 9 | ENSG00000228568 | ribosomal protein S15a (RPS15A) pseudogene | 2.1073 | 0.0000 | |
| 10 | ENSG00000199051 | MIR361 | microRNA 361 | 2.0000 | 0.0029 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000257327 | novel transcript | -2.0036 | 0.0000 | |
| 63340 | ENSG00000258724 | PINX1 | PIN2 (TERF1) interacting telomerase inhibitor 1 | -2.0028 | 0.0000 |
| 63339 | ENSG00000185915 | KLHL34 | kelch like family member 34 | -2.0027 | 0.0000 |
| 63338 | ENSG00000263697 | MIR3621 | microRNA 3621 | -2.0025 | 0.0000 |
| 63337 | ENSG00000249459 | ZNF286B | zinc finger protein 286B (pseudogene) | -2.0025 | 0.0000 |
| 63336 | ENSG00000278901 | novel transcript, antisense to PCDHA13 | -2.0022 | 0.0000 | |
| 63335 | ENSG00000237338 | FTCD-AS1 | FTCD antisense RNA 1 | -2.0018 | 0.0000 |
| 63334 | ENSG00000145545 | SRD5A1 | steroid 5 alpha-reductase 1 | -2.0008 | 0.0000 |
| 63333 | ENSG00000185090 | MANEAL | mannosidase endo-alpha like | -2.0006 | 0.0000 |
| 63332 | ENSG00000259956 | RBM15B | RNA binding motif protein 15B | -2.0005 | 0.0000 |
