Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773683

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773683


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M310Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199878 RN7SKP149 RN7SK pseudogene 149 3.2297 0.0000
2 ENSG00000109163 GNRHR gonadotropin releasing hormone receptor 3.1699 0.0000
3 ENSG00000222713 RN7SKP51 RN7SK pseudogene 51 3.1699 0.0000
4 ENSG00000257545 novel transcript, antisense to POLR3B, RFX4 and RIC8B. 3.0373 0.0000
5 ENSG00000224799 novel transcript 3.0000 0.0000
6 ENSG00000248745 NMNAT1P4 NMNAT1 pseudogene 4 3.0000 0.0000
7 ENSG00000251172 pseudogene similar to part of transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 (TPTE2) 3.0000 0.0000
8 ENSG00000272354 novel transcript 3.0000 0.0000
9 ENSG00000272370 novel transcript 3.0000 0.0000
10 ENSG00000276578 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 (SULT2A1) pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234020 CHIAP3 chitinase, acidic pseudogene 3 -2.3052 0.0000
63127 ENSG00000227484 novel transcript -2.3038 0.0000
63126 ENSG00000185155 MIXL1 Mix paired-like homeobox -2.3038 0.0000
63125 ENSG00000202191 SNORD113-1 small nucleolar RNA, C/D box 113-1 -2.3036 0.0353
63124 ENSG00000255063 RBMXP3 RBMX pseudogene 3 -2.3023 0.1460
63123 ENSG00000188938 FAM120AOS family with sequence similarity 120A opposite strand -2.3018 0.0000
63122 ENSG00000275215 RNA5-8SN3 RNA, 5.8S ribosomal N3 -2.3018 0.0000
63121 ENSG00000189266 PNRC2 proline rich nuclear receptor coactivator 2 -2.3008 0.0000
63120 ENSG00000083844 ZNF264 zinc finger protein 264 -2.3005 0.0000
63119 ENSG00000252401 RNU4ATAC6P RNA, U4atac small nuclear 6, pseudogene -2.3003 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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