SHOGoiN Cell Methylome: GSM2773684

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773684


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M311Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248551 novel transcript 2.5850 0.0001
2 ENSG00000239877 IGSF11-AS1 IGSF11 antisense RNA 1 2.3219 0.0005
3 ENSG00000225665 SAR1AP3 secretion associated Ras related GTPase 1A pseudogene 3 2.0763 0.0000
4 ENSG00000186645 SPDYE17 speedy/RINGO cell cycle regulator family member E17 2.0000 0.0000
5 ENSG00000196098 OR5K4 olfactory receptor family 5 subfamily K member 4 2.0000 0.0000
6 ENSG00000224368 ARAFP2 ARAF pseudogene 2 2.0000 0.0034
7 ENSG00000226857 DUTP3 deoxyuridine triphosphatase pseudogene 3 2.0000 0.0034
8 ENSG00000238697 RNU6-261P RNA, U6 small nuclear 261, pseudogene 2.0000 0.0034
9 ENSG00000238906 NA 2.0000 0.0034
10 ENSG00000240032 LNCSRLR lncRNA sorafenib resistance in renal cell carcinoma associated 2.0000 0.0034

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000185480 PARPBP PARP1 binding protein -1.8684 0.0000
63340 ENSG00000253715 novel transcript -1.8682 0.0000
63339 ENSG00000196566 novel transcript -1.8682 0.0000
63338 ENSG00000110328 GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 -1.8681 0.0000
63337 ENSG00000184351 KRTAP19-1 keratin associated protein 19-1 -1.8680 0.4170
63336 ENSG00000264735 novel transcript -1.8680 0.0000
63335 ENSG00000279369 TEC -1.8679 0.0000
63334 ENSG00000276609 NA -1.8677 0.0000
63333 ENSG00000224616 RTCA-AS1 RTCA antisense RNA 1 -1.8675 0.0000
63332 ENSG00000152076 CCDC74B coiled-coil domain containing 74B -1.8671 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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