Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773684

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773684


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M311Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248551 novel transcript 2.5850 0.0001
2 ENSG00000239877 IGSF11-AS1 IGSF11 antisense RNA 1 2.3219 0.0005
3 ENSG00000225665 SAR1AP3 secretion associated Ras related GTPase 1A pseudogene 3 2.0763 0.0000
4 ENSG00000186645 SPDYE17 speedy/RINGO cell cycle regulator family member E17 2.0000 0.0000
5 ENSG00000196098 OR5K4 olfactory receptor family 5 subfamily K member 4 2.0000 0.0000
6 ENSG00000224368 ARAFP2 ARAF pseudogene 2 2.0000 0.0034
7 ENSG00000226857 DUTP3 deoxyuridine triphosphatase pseudogene 3 2.0000 0.0034
8 ENSG00000238697 RNU6-261P RNA, U6 small nuclear 261, pseudogene 2.0000 0.0034
9 ENSG00000238906 NA 2.0000 0.0034
10 ENSG00000240032 LNCSRLR lncRNA sorafenib resistance in renal cell carcinoma associated 2.0000 0.0034

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000170837 GPR27 G protein-coupled receptor 27 -1.8145 0.0000
63127 ENSG00000241357 novel transcript -1.8144 0.0000
63126 ENSG00000223776 LGALS8-AS1 LGALS8 antisense RNA 1 -1.8142 0.0000
63125 ENSG00000144591 GMPPA GDP-mannose pyrophosphorylase A -1.8140 0.0000
63124 ENSG00000185561 TLCD2 TLC domain containing 2 -1.8135 0.0000
63123 ENSG00000269054 ZNF497-AS1 ZNF497 antisense RNA 1 -1.8131 0.0000
63122 ENSG00000263697 MIR3621 microRNA 3621 -1.8131 0.0000
63121 ENSG00000284488 MIR6890 microRNA 6890 -1.8129 0.0000
63120 ENSG00000212747 RTL8B retrotransposon Gag like 8B -1.8127 0.0000
63119 ENSG00000152147 GEMIN6 gem nuclear organelle associated protein 6 -1.8126 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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