Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773685

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773685


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M312Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271712 family with sequence similarity 71, member B (FAM71B) pseudogene 2.8074 0.0000
2 ENSG00000244321 LINC01326 long intergenic non-protein coding RNA 1326 2.3219 0.0000
3 ENSG00000280082 TEC 2.3219 0.0000
4 ENSG00000109272 PF4V1 platelet factor 4 variant 1 2.0000 0.0040
5 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 2.0000 0.0000
6 ENSG00000201933 Y RNA 2.0000 0.0000
7 ENSG00000255029 novel transcript 2.0000 0.0000
8 ENSG00000203926 SPANXA2 SPANX family member A2 1.9170 0.0000
9 ENSG00000242111 TOPORSLP topoisomerase I binding, arginine and serine rich like, pseudogene 1.8814 0.0000
10 ENSG00000224498 MAPKAPK5P1 MAPKAPK5 pseudogene 1 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000186767 SPIN4 spindlin family member 4 -1.8526 0.0001
63127 ENSG00000283414 U6 spliceosomal RNA -1.8521 0.0000
63126 ENSG00000120457 KCNJ5 potassium inwardly rectifying channel subfamily J member 5 -1.8518 0.0000
63125 ENSG00000260549 MT1L metallothionein 1L, pseudogene -1.8515 0.0000
63124 ENSG00000273264 novel transcript -1.8511 0.0000
63123 ENSG00000181444 ZNF467 zinc finger protein 467 -1.8510 0.0000
63122 ENSG00000184113 CLDN5 claudin 5 -1.8509 0.0000
63121 ENSG00000281883 novel transcript -1.8508 0.0000
63120 ENSG00000201264 SNORD73B small nucleolar RNA, C/D box U73B -1.8508 0.0000
63119 ENSG00000257191 novel transcript, antisense to SYT1 -1.8504 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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