SHOGoiN Cell Methylome: GSM2773685

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773685


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M312Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271712 family with sequence similarity 71, member B (FAM71B) pseudogene 2.8074 0.0000
2 ENSG00000244321 LINC01326 long intergenic non-protein coding RNA 1326 2.3219 0.0000
3 ENSG00000280082 TEC 2.3219 0.0000
4 ENSG00000109272 PF4V1 platelet factor 4 variant 1 2.0000 0.0040
5 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 2.0000 0.0000
6 ENSG00000201933 NA 2.0000 0.0000
7 ENSG00000255029 novel transcript 2.0000 0.0000
8 ENSG00000203926 SPANXA2 SPANX family member A2 1.9170 0.0000
9 ENSG00000242111 TOPORSLP topoisomerase I binding, arginine and serine rich like, pseudogene 1.8814 0.0000
10 ENSG00000224498 MAPKAPK5P1 mitogen-activated protein kinase-activated protein kinase 5 pseudogene 1 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000185187 SIGIRR single Ig and TIR domain containing -1.9135 0.0000
63340 ENSG00000113083 LOX lysyl oxidase -1.9135 0.0000
63339 ENSG00000123570 RAB9B RAB9B, member RAS oncogene family -1.9133 0.0000
63338 ENSG00000252604 RNU2-44P RNA, U2 small nuclear 44, pseudogene -1.9130 0.0000
63337 ENSG00000112232 KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 -1.9127 0.0000
63336 ENSG00000212493 SNORD19 small nucleolar RNA, C/D box 19 -1.9126 0.0000
63335 ENSG00000230084 novel transcript -1.9125 0.0000
63334 ENSG00000254733 novel transcript, antisense to ME3 -1.9120 0.0000
63333 ENSG00000103449 SALL1 spalt like transcription factor 1 -1.9115 0.0000
63332 ENSG00000231095 GYG1P3 glycogenin 1 pseudogene 3 -1.9112 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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