SHOGoiN Cell Methylome: GSM2773686

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773686


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M313Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000284482 MIR4680 microRNA 4680 2.5850 0.0001
2 ENSG00000177803 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide (YWHAQ) pseudogene 2.3219 0.0006
3 ENSG00000221849 zinc finger protein 547 (ZNF547) pseudogene 2.3219 0.0000
4 ENSG00000265322 MIR3118-2 microRNA 3118-2 2.3219 0.0000
5 ENSG00000278980 novel transcript 2.3219 0.0006
6 ENSG00000254794 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.1887 0.0000
7 ENSG00000250037 FAST kinase domains 3 (FASTKD3) pseudogene 2.0221 0.0000
8 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 2.0000 0.0039
9 ENSG00000202379 NA 2.0000 0.0000
10 ENSG00000207815 MIR563 microRNA 563 2.0000 0.0039

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000266718 novel transcript, antisense MYO1D -2.0429 0.0000
63340 ENSG00000168811 IL12A interleukin 12A -2.0427 0.0000
63339 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -2.0426 0.0000
63338 ENSG00000269427 novel transcript, antisense C19orf42 -2.0421 0.0000
63337 ENSG00000164088 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M -2.0419 0.0000
63336 ENSG00000271167 LINC01109 long intergenic non-protein coding RNA 1109 -2.0411 0.0102
63335 ENSG00000270866 novel transcript -2.0411 0.0102
63334 ENSG00000188372 ZP3 zona pellucida glycoprotein 3 -2.0409 0.0000
63333 ENSG00000080709 KCNN2 potassium calcium-activated channel subfamily N member 2 -2.0406 0.0000
63332 ENSG00000236229 VEZF1P1 vascular endothelial zinc finger 1 pseudogene 1 -2.0398 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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