SHOGoiN Cell Methylome: GSM2773687

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773687


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M314Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241792 novel transcript 3.1699 0.0000
2 ENSG00000251137 RPL7L1P7 ribosomal protein L7 like 1 pseudogene 7 3.0000 0.0000
3 ENSG00000263637 novel transcript, antisense to CCDC102B 3.0000 0.0000
4 ENSG00000265641 MIR3929 microRNA 3929 2.9037 0.0000
5 ENSG00000231620 novel transcript 2.8219 0.0000
6 ENSG00000271290 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) (COPS8) pseudogene 2.8074 0.0000
7 ENSG00000166396 SERPINB7 serpin family B member 7 2.5850 0.0000
8 ENSG00000199571 NA 2.5850 0.0000
9 ENSG00000201665 RN7SKP6 RN7SK pseudogene 6 2.5850 0.0000
10 ENSG00000226616 OR52M2P olfactory receptor family 52 subfamily M member 2 pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000198976 MIR429 microRNA 429 -2.0972 0.0000
63340 ENSG00000108813 DLX4 distal-less homeobox 4 -2.0969 0.0000
63339 ENSG00000253653 novel transcript -2.0967 0.0000
63338 ENSG00000236536 novel transcript -2.0966 0.0000
63337 ENSG00000251409 novel transcript -2.0957 0.0000
63336 ENSG00000116962 NID1 nidogen 1 -2.0956 0.0000
63335 ENSG00000166681 BEX3 brain expressed X-linked 3 -2.0955 0.0000
63334 ENSG00000201394 RNA5SP140 RNA, 5S ribosomal pseudogene 140 -2.0949 0.0004
63333 ENSG00000236708 novel transcript -2.0948 0.0000
63332 ENSG00000172461 FUT9 fucosyltransferase 9 -2.0947 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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