Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773687

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773687


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M314Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241792 novel transcript 3.1699 0.0000
2 ENSG00000251137 RPL7L1P7 ribosomal protein L7 like 1 pseudogene 7 3.0000 0.0000
3 ENSG00000263637 novel transcript, antisense to CCDC102B 3.0000 0.0000
4 ENSG00000265641 MIR3929 microRNA 3929 2.9037 0.0000
5 ENSG00000231620 novel transcript 2.8219 0.0000
6 ENSG00000271290 COPS8P1 COP9 signalosome subunit 8 pseudogene 1 2.8074 0.0000
7 ENSG00000166396 SERPINB7 serpin family B member 7 2.5850 0.0000
8 ENSG00000199571 NA 2.5850 0.0000
9 ENSG00000201665 RN7SKP6 RN7SK pseudogene 6 2.5850 0.0000
10 ENSG00000226616 OR52M2P olfactory receptor family 52 subfamily M member 2 pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000125827 TMX4 thioredoxin related transmembrane protein 4 -2.0315 0.0000
63127 ENSG00000274253 novel transcript, sense overlapping NIPA1 -2.0314 0.0000
63126 ENSG00000235852 novel transcript -2.0313 0.0000
63125 ENSG00000185697 MYBL1 MYB proto-oncogene like 1 -2.0311 0.0000
63124 ENSG00000103253 HAGHL hydroxyacylglutathione hydrolase like -2.0306 0.0000
63123 ENSG00000261420 MPC1-DT MPC1 divergent transcript -2.0306 0.0000
63122 ENSG00000183741 CBX6 chromobox 6 -2.0306 0.0000
63121 ENSG00000233198 RNF224 ring finger protein 224 -2.0304 0.0000
63120 ENSG00000013306 SLC25A39 solute carrier family 25 member 39 -2.0303 0.0000
63119 ENSG00000272008 novel transcript, antisense to ZNF292 -2.0299 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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