Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773688

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773688


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M315Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251614 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 2.8074 0.0000
2 ENSG00000226393 IFNA20P interferon alpha 20, pseudogene 2.6610 0.0000
3 ENSG00000138379 MSTN myostatin 2.5850 0.0000
4 ENSG00000200146 RNU6-544P RNA, U6 small nuclear 544, pseudogene 2.5850 0.0000
5 ENSG00000200902 RNU6-627P RNA, U6 small nuclear 627, pseudogene 2.5850 0.0000
6 ENSG00000229119 60S acidic ribosomal protein (RPLP0) pseudogene 2.5850 0.0000
7 ENSG00000231675 nuclear receptor coactivator 6 (NCOA6) pseudogene 2.5850 0.0000
8 ENSG00000240393 developmentally regulated GTP binding protein 1 (DRG1) pseudogene 2.5850 0.0000
9 ENSG00000251218 novel transcript 2.5850 0.0000
10 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000283301 MIR4520-2 microRNA 4520-2 -2.0013 0.0000
63127 ENSG00000238884 RNU7-85P RNA, U7 small nuclear 85 pseudogene -2.0010 0.0667
63126 ENSG00000172031 EPHX4 epoxide hydrolase 4 -2.0008 0.0000
63125 ENSG00000283571 novel IG pseudogene -2.0000 1.0000
63124 ENSG00000282600 IGHV3-69-1 immunoglobulin heavy variable 3-69-1 (pseudogene) -2.0000 0.6128
63123 ENSG00000279994 TEC -2.0000 1.0000
63122 ENSG00000278955 novel transcript -2.0000 1.0000
63121 ENSG00000278182 phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene -2.0000 1.0000
63119 ENSG00000277172 GAPDHP41 glyceraldehyde 3 phosphate dehydrogenase pseudogene 41 -2.0000 0.3829
10 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...