SHOGoiN Cell Methylome: GSM2773688
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773688 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M315 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000251614 | HSPA8P19 | heat shock protein family A (Hsp70) member pseudogene 19 | 2.8074 | 0.0000 |
| 2 | ENSG00000226393 | IFNA20P | interferon alpha 20, pseudogene | 2.6610 | 0.0000 |
| 3 | ENSG00000138379 | MSTN | myostatin | 2.5850 | 0.0000 |
| 4 | ENSG00000200146 | RNU6-544P | RNA, U6 small nuclear 544, pseudogene | 2.5850 | 0.0000 |
| 5 | ENSG00000200902 | RNU6-627P | RNA, U6 small nuclear 627, pseudogene | 2.5850 | 0.0000 |
| 6 | ENSG00000229119 | 60S acidic ribosomal protein (RPLP0) pseudogene | 2.5850 | 0.0000 | |
| 7 | ENSG00000231675 | nuclear receptor coactivator 6 (NCOA6) pseudogene | 2.5850 | 0.0000 | |
| 8 | ENSG00000240393 | developmentally regulated GTP binding protein 1 (DRG1) pseudogene | 2.5850 | 0.0000 | |
| 9 | ENSG00000251218 | novel transcript | 2.5850 | 0.0000 | |
| 10 | ENSG00000253571 | transcriptional adaptor 1 (TADA1) pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000093100 | novel transcript | -2.0658 | 0.0000 | |
| 63340 | ENSG00000187372 | PCDHB13 | protocadherin beta 13 | -2.0658 | 0.0000 |
| 63339 | ENSG00000253495 | CYCSP23 | CYCS pseudogene 23 | -2.0657 | 0.0004 |
| 63338 | ENSG00000280262 | tec | -2.0655 | 0.0000 | |
| 63337 | ENSG00000099246 | RAB18 | RAB18, member RAS oncogene family | -2.0650 | 0.0000 |
| 63336 | ENSG00000172818 | OVOL1 | ovo like transcriptional repressor 1 | -2.0649 | 0.0000 |
| 63335 | ENSG00000187583 | PLEKHN1 | pleckstrin homology domain containing N1 | -2.0640 | 0.0000 |
| 63334 | ENSG00000224592 | novel transcript | -2.0631 | 0.0000 | |
| 63333 | ENSG00000145780 | FEM1C | fem-1 homolog C | -2.0627 | 0.0000 |
| 63332 | ENSG00000258728 | novel protein (GALT-IL11RA readthrough) | -2.0624 | 0.0000 |
