Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773688

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773688 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M315	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251614	HSPA8P19	heat shock protein family A (Hsp70) member pseudogene 19	2.8074	0.0000
2	ENSG00000226393	IFNA20P	interferon alpha 20, pseudogene	2.6610	0.0000
3	ENSG00000138379	MSTN	myostatin	2.5850	0.0000
4	ENSG00000200146	RNU6-544P	RNA, U6 small nuclear 544, pseudogene	2.5850	0.0000
5	ENSG00000200902	RNU6-627P	RNA, U6 small nuclear 627, pseudogene	2.5850	0.0000
6	ENSG00000229119		60S acidic ribosomal protein (RPLP0) pseudogene	2.5850	0.0000
7	ENSG00000231675		nuclear receptor coactivator 6 (NCOA6) pseudogene	2.5850	0.0000
8	ENSG00000240393		developmentally regulated GTP binding protein 1 (DRG1) pseudogene	2.5850	0.0000
9	ENSG00000251218		novel transcript	2.5850	0.0000
10	ENSG00000253571		transcriptional adaptor 1 (TADA1) pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000283301	MIR4520-2	microRNA 4520-2	-2.0013	0.0000
63127	ENSG00000238884	RNU7-85P	RNA, U7 small nuclear 85 pseudogene	-2.0010	0.0667
63126	ENSG00000172031	EPHX4	epoxide hydrolase 4	-2.0008	0.0000
63125	ENSG00000283571		novel IG pseudogene	-2.0000	1.0000
63124	ENSG00000282600	IGHV3-69-1	immunoglobulin heavy variable 3-69-1 (pseudogene)	-2.0000	0.6128
63123	ENSG00000279994		TEC	-2.0000	1.0000
63122	ENSG00000278955		novel transcript	-2.0000	1.0000
63121	ENSG00000278182		phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene	-2.0000	1.0000
63119	ENSG00000277172	GAPDHP41	glyceraldehyde 3 phosphate dehydrogenase pseudogene 41	-2.0000	0.3829
10	ENSG00000253571		transcriptional adaptor 1 (TADA1) pseudogene	2.5850	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...