Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773688
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773688
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M315
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000251614
HSPA8P19
heat shock protein family A (Hsp70) member pseudogene 19
2.8074
0.0000
2
ENSG00000226393
IFNA20P
interferon alpha 20, pseudogene
2.6610
0.0000
3
ENSG00000138379
MSTN
myostatin
2.5850
0.0000
4
ENSG00000200146
RNU6-544P
RNA, U6 small nuclear 544, pseudogene
2.5850
0.0000
5
ENSG00000200902
RNU6-627P
RNA, U6 small nuclear 627, pseudogene
2.5850
0.0000
6
ENSG00000229119
60S acidic ribosomal protein (RPLP0) pseudogene
2.5850
0.0000
7
ENSG00000231675
nuclear receptor coactivator 6 (NCOA6) pseudogene
2.5850
0.0000
8
ENSG00000240393
developmentally regulated GTP binding protein 1 (DRG1) pseudogene
2.5850
0.0000
9
ENSG00000251218
novel transcript
2.5850
0.0000
10
ENSG00000253571
transcriptional adaptor 1 (TADA1) pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000283301
MIR4520-2
microRNA 4520-2
-2.0013
0.0000
63127
ENSG00000238884
RNU7-85P
RNA, U7 small nuclear 85 pseudogene
-2.0010
0.0667
63126
ENSG00000172031
EPHX4
epoxide hydrolase 4
-2.0008
0.0000
63125
ENSG00000283571
novel IG pseudogene
-2.0000
1.0000
63124
ENSG00000282600
IGHV3-69-1
immunoglobulin heavy variable 3-69-1 (pseudogene)
-2.0000
0.6128
63123
ENSG00000279994
TEC
-2.0000
1.0000
63122
ENSG00000278955
novel transcript
-2.0000
1.0000
63121
ENSG00000278182
phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene
-2.0000
1.0000
63119
ENSG00000277172
GAPDHP41
glyceraldehyde 3 phosphate dehydrogenase pseudogene 41
-2.0000
0.3829
10
ENSG00000253571
transcriptional adaptor 1 (TADA1) pseudogene
2.5850
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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