SHOGoiN Cell Methylome: GSM2773688

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773688


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M315Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251614 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 2.8074 0.0000
2 ENSG00000226393 IFNA20P interferon alpha 20, pseudogene 2.6610 0.0000
3 ENSG00000138379 MSTN myostatin 2.5850 0.0000
4 ENSG00000200146 RNU6-544P RNA, U6 small nuclear 544, pseudogene 2.5850 0.0000
5 ENSG00000200902 RNU6-627P RNA, U6 small nuclear 627, pseudogene 2.5850 0.0000
6 ENSG00000229119 60S acidic ribosomal protein (RPLP0) pseudogene 2.5850 0.0000
7 ENSG00000231675 nuclear receptor coactivator 6 (NCOA6) pseudogene 2.5850 0.0000
8 ENSG00000240393 developmentally regulated GTP binding protein 1 (DRG1) pseudogene 2.5850 0.0000
9 ENSG00000251218 novel transcript 2.5850 0.0000
10 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000093100 novel transcript -2.0658 0.0000
63340 ENSG00000187372 PCDHB13 protocadherin beta 13 -2.0658 0.0000
63339 ENSG00000253495 CYCSP23 CYCS pseudogene 23 -2.0657 0.0004
63338 ENSG00000280262 tec -2.0655 0.0000
63337 ENSG00000099246 RAB18 RAB18, member RAS oncogene family -2.0650 0.0000
63336 ENSG00000172818 OVOL1 ovo like transcriptional repressor 1 -2.0649 0.0000
63335 ENSG00000187583 PLEKHN1 pleckstrin homology domain containing N1 -2.0640 0.0000
63334 ENSG00000224592 novel transcript -2.0631 0.0000
63333 ENSG00000145780 FEM1C fem-1 homolog C -2.0627 0.0000
63332 ENSG00000258728 novel protein (GALT-IL11RA readthrough) -2.0624 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...