Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773689
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773689
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M316
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230945
LINC01507
long intergenic non-protein coding RNA 1507
2.3219
0.0003
2
ENSG00000232812
LINC01717
long intergenic non-protein coding RNA 1717
2.3219
0.0003
3
ENSG00000240376
ribosomal protein S8 (RPS8) pseudogene
2.3219
0.0003
4
ENSG00000224296
MRPL49P1
mitochondrial ribosomal protein L49 pseudogene 1
2.2049
0.0000
5
ENSG00000253676
TAGLN2P1
transgelin 2 pseudogene 1
2.1923
0.0000
6
ENSG00000230584
CCT5P2
chaperonin containing TCP1 subunit 5 pseudogene 2
2.0000
0.0020
7
ENSG00000231589
novel transcript
2.0000
0.0000
8
ENSG00000236433
RPL37P21
ribosomal protein L37 pseudogene 21
2.0000
0.0020
10
ENSG00000253657
DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene
2.0000
0.0020
63119
ENSG00000214290
COLCA2
colorectal cancer associated 2
-1.9443
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000224536
novel transcript
-1.9452
0.0000
63127
ENSG00000135722
FBXL8
F-box and leucine rich repeat protein 8
-1.9449
0.0000
63126
ENSG00000173930
SLCO4C1
solute carrier organic anion transporter family member 4C1
-1.9449
0.0000
63125
ENSG00000157111
TMEM171
transmembrane protein 171
-1.9449
0.0000
63124
ENSG00000254791
FAR1-IT1
FAR1 intronic transcript 1
-1.9447
0.0000
63123
ENSG00000206432
TMEM200C
transmembrane protein 200C
-1.9445
0.0000
63122
ENSG00000155366
RHOC
ras homolog family member C
-1.9445
0.0000
63121
ENSG00000282375
novel transcript
-1.9445
0.0000
63120
ENSG00000161610
HCRT
hypocretin neuropeptide precursor
-1.9444
0.0000
63119
ENSG00000214290
COLCA2
colorectal cancer associated 2
-1.9443
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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