SHOGoiN Cell Methylome: GSM2773689

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773689


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M316Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230945 LINC01507 long intergenic non-protein coding RNA 1507 2.3219 0.0003
2 ENSG00000232812 LINC01717 long intergenic non-protein coding RNA 1717 2.3219 0.0003
3 ENSG00000240376 ribosomal protein S8 (RPS8) pseudogene 2.3219 0.0003
4 ENSG00000224296 MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 2.2049 0.0000
5 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 2.1923 0.0000
6 ENSG00000230584 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 2.0000 0.0020
7 ENSG00000231589 novel transcript 2.0000 0.0000
8 ENSG00000236433 RPL37P21 ribosomal protein L37 pseudogene 21 2.0000 0.0020
10 ENSG00000253657 DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene 2.0000 0.0020
63332 ENSG00000199636 NA -1.9973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278907 novel transcript, antisense to PCDHA9 -1.9992 0.0000
63340 ENSG00000123999 INHA inhibin subunit alpha -1.9989 0.0000
63339 ENSG00000185187 SIGIRR single Ig and TIR domain containing -1.9982 0.0000
63338 ENSG00000265112 MIR3153 microRNA 3153 -1.9981 0.0000
63337 ENSG00000068078 FGFR3 fibroblast growth factor receptor 3 -1.9980 0.0000
63336 ENSG00000061455 PRDM6 PR/SET domain 6 -1.9979 0.0000
63335 ENSG00000204779 FOXD4L5 forkhead box D4 like 5 -1.9979 0.0000
63334 ENSG00000104888 SLC17A7 solute carrier family 17 member 7 -1.9979 0.0000
63333 ENSG00000182107 TMEM30B transmembrane protein 30B -1.9977 0.0000
63332 ENSG00000199636 NA -1.9973 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...