Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773689

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773689 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M316	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230945	LINC01507	long intergenic non-protein coding RNA 1507	2.3219	0.0003
2	ENSG00000232812	LINC01717	long intergenic non-protein coding RNA 1717	2.3219	0.0003
3	ENSG00000240376		ribosomal protein S8 (RPS8) pseudogene	2.3219	0.0003
4	ENSG00000224296	MRPL49P1	mitochondrial ribosomal protein L49 pseudogene 1	2.2049	0.0000
5	ENSG00000253676	TAGLN2P1	transgelin 2 pseudogene 1	2.1923	0.0000
6	ENSG00000230584	CCT5P2	chaperonin containing TCP1 subunit 5 pseudogene 2	2.0000	0.0020
7	ENSG00000231589		novel transcript	2.0000	0.0000
8	ENSG00000236433	RPL37P21	ribosomal protein L37 pseudogene 21	2.0000	0.0020
10	ENSG00000253657		DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene	2.0000	0.0020
63119	ENSG00000214290	COLCA2	colorectal cancer associated 2	-1.9443	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000224536		novel transcript	-1.9452	0.0000
63127	ENSG00000135722	FBXL8	F-box and leucine rich repeat protein 8	-1.9449	0.0000
63126	ENSG00000173930	SLCO4C1	solute carrier organic anion transporter family member 4C1	-1.9449	0.0000
63125	ENSG00000157111	TMEM171	transmembrane protein 171	-1.9449	0.0000
63124	ENSG00000254791	FAR1-IT1	FAR1 intronic transcript 1	-1.9447	0.0000
63123	ENSG00000206432	TMEM200C	transmembrane protein 200C	-1.9445	0.0000
63122	ENSG00000155366	RHOC	ras homolog family member C	-1.9445	0.0000
63121	ENSG00000282375		novel transcript	-1.9445	0.0000
63120	ENSG00000161610	HCRT	hypocretin neuropeptide precursor	-1.9444	0.0000
63119	ENSG00000214290	COLCA2	colorectal cancer associated 2	-1.9443	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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