Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773689

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773689


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M316Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230945 LINC01507 long intergenic non-protein coding RNA 1507 2.3219 0.0003
2 ENSG00000232812 LINC01717 long intergenic non-protein coding RNA 1717 2.3219 0.0003
3 ENSG00000240376 ribosomal protein S8 (RPS8) pseudogene 2.3219 0.0003
4 ENSG00000224296 MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 2.2049 0.0000
5 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 2.1923 0.0000
6 ENSG00000230584 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 2.0000 0.0020
7 ENSG00000231589 novel transcript 2.0000 0.0000
8 ENSG00000236433 RPL37P21 ribosomal protein L37 pseudogene 21 2.0000 0.0020
10 ENSG00000253657 DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene 2.0000 0.0020
63119 ENSG00000214290 COLCA2 colorectal cancer associated 2 -1.9443 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000224536 novel transcript -1.9452 0.0000
63127 ENSG00000135722 FBXL8 F-box and leucine rich repeat protein 8 -1.9449 0.0000
63126 ENSG00000173930 SLCO4C1 solute carrier organic anion transporter family member 4C1 -1.9449 0.0000
63125 ENSG00000157111 TMEM171 transmembrane protein 171 -1.9449 0.0000
63124 ENSG00000254791 FAR1-IT1 FAR1 intronic transcript 1 -1.9447 0.0000
63123 ENSG00000206432 TMEM200C transmembrane protein 200C -1.9445 0.0000
63122 ENSG00000155366 RHOC ras homolog family member C -1.9445 0.0000
63121 ENSG00000282375 novel transcript -1.9445 0.0000
63120 ENSG00000161610 HCRT hypocretin neuropeptide precursor -1.9444 0.0000
63119 ENSG00000214290 COLCA2 colorectal cancer associated 2 -1.9443 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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