SHOGoiN Cell Methylome: GSM2773689
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773689 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M316 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230945 | LINC01507 | long intergenic non-protein coding RNA 1507 | 2.3219 | 0.0003 |
| 2 | ENSG00000232812 | LINC01717 | long intergenic non-protein coding RNA 1717 | 2.3219 | 0.0003 |
| 3 | ENSG00000240376 | ribosomal protein S8 (RPS8) pseudogene | 2.3219 | 0.0003 | |
| 4 | ENSG00000224296 | MRPL49P1 | mitochondrial ribosomal protein L49 pseudogene 1 | 2.2049 | 0.0000 |
| 5 | ENSG00000253676 | TAGLN2P1 | transgelin 2 pseudogene 1 | 2.1923 | 0.0000 |
| 6 | ENSG00000230584 | CCT5P2 | chaperonin containing TCP1 subunit 5 pseudogene 2 | 2.0000 | 0.0020 |
| 7 | ENSG00000231589 | novel transcript | 2.0000 | 0.0000 | |
| 8 | ENSG00000236433 | RPL37P21 | ribosomal protein L37 pseudogene 21 | 2.0000 | 0.0020 |
| 10 | ENSG00000253657 | DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene | 2.0000 | 0.0020 | |
| 63332 | ENSG00000199636 | NA | -1.9973 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000278907 | novel transcript, antisense to PCDHA9 | -1.9992 | 0.0000 | |
| 63340 | ENSG00000123999 | INHA | inhibin subunit alpha | -1.9989 | 0.0000 |
| 63339 | ENSG00000185187 | SIGIRR | single Ig and TIR domain containing | -1.9982 | 0.0000 |
| 63338 | ENSG00000265112 | MIR3153 | microRNA 3153 | -1.9981 | 0.0000 |
| 63337 | ENSG00000068078 | FGFR3 | fibroblast growth factor receptor 3 | -1.9980 | 0.0000 |
| 63336 | ENSG00000061455 | PRDM6 | PR/SET domain 6 | -1.9979 | 0.0000 |
| 63335 | ENSG00000204779 | FOXD4L5 | forkhead box D4 like 5 | -1.9979 | 0.0000 |
| 63334 | ENSG00000104888 | SLC17A7 | solute carrier family 17 member 7 | -1.9979 | 0.0000 |
| 63333 | ENSG00000182107 | TMEM30B | transmembrane protein 30B | -1.9977 | 0.0000 |
| 63332 | ENSG00000199636 | NA | -1.9973 | 0.0000 |
