Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773690

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773690 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M317	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000265735	RN7SL5P	RNA, 7SL, cytoplasmic 5, pseudogene	2.3219	0.0000
2	ENSG00000200814	RNU6-595P	RNA, U6 small nuclear 595, pseudogene	1.6443	0.0000
3	ENSG00000212620		Small nucleolar RNA SNORA75	1.5850	0.0000
4	ENSG00000229208	RBMY2NP	RNA binding motif protein Y-linked family 2 member N, pseudogene	1.5850	0.0234
5	ENSG00000230968		novel transcript	1.5850	0.0005
6	ENSG00000259113		novel transcript	1.5850	0.0234
7	ENSG00000283476	MIR1279	microRNA 1279	1.5850	0.0234
8	ENSG00000271679	LSM1P2	LSM1 homolog, mRNA degradation associated pseudogene 2	1.4680	0.0000
9	ENSG00000176695	OR4F17	olfactory receptor family 4 subfamily F member 17	1.4387	0.0000
10	ENSG00000248363		novel transcript	1.3900	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000163053	SLC16A14	solute carrier family 16 member 14	-1.7934	0.0000
63127	ENSG00000130700	GATA5	GATA binding protein 5	-1.7934	0.0000
63126	ENSG00000255513		ribosomal protein L26 (RPL26) pseudogene	-1.7933	0.0000
63125	ENSG00000207559	MIR578	microRNA 578	-1.7932	0.0000
63124	ENSG00000105122	RASAL3	RAS protein activator like 3	-1.7930	0.0000
63123	ENSG00000207357	RNU6-2	RNA, U6 small nuclear 2	-1.7928	0.0000
63122	ENSG00000252749	RNU7-116P	RNA, U7 small nuclear 116 pseudogene	-1.7928	0.0000
63121	ENSG00000274934		NA	-1.7926	0.0000
63120	ENSG00000267131		novel transcript, antisense to BCAS3	-1.7918	0.0000
63119	ENSG00000249906		novel transcript	-1.7916	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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