SHOGoiN Cell Methylome: GSM2773690
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773690 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M317 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000265735 | RN7SL5P | RNA, 7SL, cytoplasmic 5, pseudogene | 2.3219 | 0.0000 |
| 2 | ENSG00000200814 | RNU6-595P | RNA, U6 small nuclear 595, pseudogene | 1.6443 | 0.0000 |
| 3 | ENSG00000212620 | NA | 1.5850 | 0.0000 | |
| 4 | ENSG00000229208 | RBMY2NP | RNA binding motif protein, Y-linked, family 2, member N pseudogene | 1.5850 | 0.0234 |
| 5 | ENSG00000230968 | novel transcript | 1.5850 | 0.0005 | |
| 6 | ENSG00000259113 | novel transcript | 1.5850 | 0.0234 | |
| 7 | ENSG00000283476 | MIR1279 | microRNA 1279 | 1.5850 | 0.0234 |
| 8 | ENSG00000271679 | LSM1P2 | LSM1 homolog, mRNA degradation associated pseudogene 2 | 1.4680 | 0.0000 |
| 9 | ENSG00000176695 | olfactory receptor family 4 subfamily F member 17 | 1.4387 | 0.0000 | |
| 10 | ENSG00000248363 | novel transcript | 1.3900 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000173531 | MST1 | macrophage stimulating 1 | -1.8506 | 0.0000 |
| 63340 | ENSG00000272657 | novel transcript | -1.8504 | 0.0000 | |
| 63339 | ENSG00000264408 | MIR4470 | microRNA 4470 | -1.8504 | 0.0000 |
| 63338 | ENSG00000284574 | MIR6787 | microRNA 6787 | -1.8503 | 0.0000 |
| 63337 | ENSG00000268996 | MAN1B1-DT | MAN1B1 divergent transcript | -1.8501 | 0.0000 |
| 63336 | ENSG00000267004 | novel transcript | -1.8499 | 0.0000 | |
| 63335 | ENSG00000244242 | IFITM10 | interferon induced transmembrane protein 10 | -1.8493 | 0.0000 |
| 63334 | ENSG00000260231 | KDM7A-DT | KDM7A divergent transcript | -1.8488 | 0.0000 |
| 63333 | ENSG00000213310 | CYCSP19 | CYCS pseudogene 19 | -1.8485 | 0.0000 |
| 63332 | ENSG00000265800 | novel transcript, sense intronic to HN1 | -1.8480 | 0.0000 |
