Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773690
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773690
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M317
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000265735
RN7SL5P
RNA, 7SL, cytoplasmic 5, pseudogene
2.3219
0.0000
2
ENSG00000200814
RNU6-595P
RNA, U6 small nuclear 595, pseudogene
1.6443
0.0000
3
ENSG00000212620
Small nucleolar RNA SNORA75
1.5850
0.0000
4
ENSG00000229208
RBMY2NP
RNA binding motif protein Y-linked family 2 member N, pseudogene
1.5850
0.0234
5
ENSG00000230968
novel transcript
1.5850
0.0005
6
ENSG00000259113
novel transcript
1.5850
0.0234
7
ENSG00000283476
MIR1279
microRNA 1279
1.5850
0.0234
8
ENSG00000271679
LSM1P2
LSM1 homolog, mRNA degradation associated pseudogene 2
1.4680
0.0000
9
ENSG00000176695
OR4F17
olfactory receptor family 4 subfamily F member 17
1.4387
0.0000
10
ENSG00000248363
novel transcript
1.3900
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000163053
SLC16A14
solute carrier family 16 member 14
-1.7934
0.0000
63127
ENSG00000130700
GATA5
GATA binding protein 5
-1.7934
0.0000
63126
ENSG00000255513
ribosomal protein L26 (RPL26) pseudogene
-1.7933
0.0000
63125
ENSG00000207559
MIR578
microRNA 578
-1.7932
0.0000
63124
ENSG00000105122
RASAL3
RAS protein activator like 3
-1.7930
0.0000
63123
ENSG00000207357
RNU6-2
RNA, U6 small nuclear 2
-1.7928
0.0000
63122
ENSG00000252749
RNU7-116P
RNA, U7 small nuclear 116 pseudogene
-1.7928
0.0000
63121
ENSG00000274934
NA
-1.7926
0.0000
63120
ENSG00000267131
novel transcript, antisense to BCAS3
-1.7918
0.0000
63119
ENSG00000249906
novel transcript
-1.7916
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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