Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773690

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773690


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M317Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265735 RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene 2.3219 0.0000
2 ENSG00000200814 RNU6-595P RNA, U6 small nuclear 595, pseudogene 1.6443 0.0000
3 ENSG00000212620 Small nucleolar RNA SNORA75 1.5850 0.0000
4 ENSG00000229208 RBMY2NP RNA binding motif protein Y-linked family 2 member N, pseudogene 1.5850 0.0234
5 ENSG00000230968 novel transcript 1.5850 0.0005
6 ENSG00000259113 novel transcript 1.5850 0.0234
7 ENSG00000283476 MIR1279 microRNA 1279 1.5850 0.0234
8 ENSG00000271679 LSM1P2 LSM1 homolog, mRNA degradation associated pseudogene 2 1.4680 0.0000
9 ENSG00000176695 OR4F17 olfactory receptor family 4 subfamily F member 17 1.4387 0.0000
10 ENSG00000248363 novel transcript 1.3900 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000163053 SLC16A14 solute carrier family 16 member 14 -1.7934 0.0000
63127 ENSG00000130700 GATA5 GATA binding protein 5 -1.7934 0.0000
63126 ENSG00000255513 ribosomal protein L26 (RPL26) pseudogene -1.7933 0.0000
63125 ENSG00000207559 MIR578 microRNA 578 -1.7932 0.0000
63124 ENSG00000105122 RASAL3 RAS protein activator like 3 -1.7930 0.0000
63123 ENSG00000207357 RNU6-2 RNA, U6 small nuclear 2 -1.7928 0.0000
63122 ENSG00000252749 RNU7-116P RNA, U7 small nuclear 116 pseudogene -1.7928 0.0000
63121 ENSG00000274934 NA -1.7926 0.0000
63120 ENSG00000267131 novel transcript, antisense to BCAS3 -1.7918 0.0000
63119 ENSG00000249906 novel transcript -1.7916 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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