Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773691
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773691
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M318
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000201311
Y RNA
2.3219
0.0004
2
ENSG00000201452
RNU6-1317P
RNA, U6 small nuclear 1317, pseudogene
2.3219
0.0004
3
ENSG00000224750
novel transcript
2.3219
0.0000
4
ENSG00000226837
HMGB1P32
high mobility group box 1 pseudogene 32
2.3219
0.0000
6
ENSG00000236285
NPM1P8
nucleophosmin 1 pseudogene 8
2.3219
0.0004
7
ENSG00000236468
eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene
2.3219
0.0000
8
ENSG00000237303
HIGD1AP8
HIG1 hypoxia inducible domain family member 1A pseudogene 8
2.3219
0.0004
9
ENSG00000242573
ACTR3P3
ACTR3 pseudogene 3
2.3219
0.0000
10
ENSG00000251427
UDP glucuronosyltransferase 2 family pseudogene
2.3219
0.0004
63119
ENSG00000182013
PNMA8A
PNMA family member 8A
-1.8235
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000274934
NA
-1.8252
0.0000
63126
ENSG00000254578
novel transcript, antisense to CYHR1
-1.8247
0.0000
63125
ENSG00000283805
MIR636
microRNA 636
-1.8246
0.0000
63124
ENSG00000103355
PRSS33
serine protease 33
-1.8244
0.0000
63123
ENSG00000161610
HCRT
hypocretin neuropeptide precursor
-1.8239
0.0000
63122
ENSG00000261386
novel transcript
-1.8238
0.0000
63121
ENSG00000189120
SP6
Sp6 transcription factor
-1.8237
0.0000
63120
ENSG00000226717
PTPRD-AS2
PTPRD antisense RNA 2 (head to head)
-1.8235
0.0020
63119
ENSG00000182013
PNMA8A
PNMA family member 8A
-1.8235
0.0000
10
ENSG00000251427
UDP glucuronosyltransferase 2 family pseudogene
2.3219
0.0004
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...