Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773691

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773691 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M318	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201311		Y RNA	2.3219	0.0004
2	ENSG00000201452	RNU6-1317P	RNA, U6 small nuclear 1317, pseudogene	2.3219	0.0004
3	ENSG00000224750		novel transcript	2.3219	0.0000
4	ENSG00000226837	HMGB1P32	high mobility group box 1 pseudogene 32	2.3219	0.0000
6	ENSG00000236285	NPM1P8	nucleophosmin 1 pseudogene 8	2.3219	0.0004
7	ENSG00000236468		eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene	2.3219	0.0000
8	ENSG00000237303	HIGD1AP8	HIG1 hypoxia inducible domain family member 1A pseudogene 8	2.3219	0.0004
9	ENSG00000242573	ACTR3P3	ACTR3 pseudogene 3	2.3219	0.0000
10	ENSG00000251427		UDP glucuronosyltransferase 2 family pseudogene	2.3219	0.0004
63119	ENSG00000182013	PNMA8A	PNMA family member 8A	-1.8235	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000274934		NA	-1.8252	0.0000
63126	ENSG00000254578		novel transcript, antisense to CYHR1	-1.8247	0.0000
63125	ENSG00000283805	MIR636	microRNA 636	-1.8246	0.0000
63124	ENSG00000103355	PRSS33	serine protease 33	-1.8244	0.0000
63123	ENSG00000161610	HCRT	hypocretin neuropeptide precursor	-1.8239	0.0000
63122	ENSG00000261386		novel transcript	-1.8238	0.0000
63121	ENSG00000189120	SP6	Sp6 transcription factor	-1.8237	0.0000
63120	ENSG00000226717	PTPRD-AS2	PTPRD antisense RNA 2 (head to head)	-1.8235	0.0020
63119	ENSG00000182013	PNMA8A	PNMA family member 8A	-1.8235	0.0000
10	ENSG00000251427		UDP glucuronosyltransferase 2 family pseudogene	2.3219	0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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