SHOGoiN Cell Methylome: GSM2773691

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773691


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M318Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201311 NA 2.3219 0.0004
2 ENSG00000201452 RNU6-1317P RNA, U6 small nuclear 1317, pseudogene 2.3219 0.0004
3 ENSG00000224750 novel transcript 2.3219 0.0000
4 ENSG00000226837 HMGB1P32 high mobility group box 1 pseudogene 32 2.3219 0.0000
6 ENSG00000236285 NPM1P8 nucleophosmin 1 pseudogene 8 2.3219 0.0004
7 ENSG00000236468 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene 2.3219 0.0000
8 ENSG00000237303 HIGD1AP8 HIG1 hypoxia inducible domain family member 1A pseudogene 8 2.3219 0.0004
9 ENSG00000242573 ACTR3P3 ACTR3 pseudogene 3 2.3219 0.0000
10 ENSG00000251427 UDP glucuronosyltransferase 2 family pseudogene 2.3219 0.0004
63332 ENSG00000284399 MIR3184 microRNA 3184 -1.8783 0.1069

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000234360 ribosomal protein S12 (RPS12) pseudogene -1.8813 0.6210
63340 ENSG00000232699 BDH2P1 3-hydroxybutyrate dehydrogenase 2, pseudogene 1 -1.8813 0.6210
63339 ENSG00000212457 RNU6-644P RNA, U6 small nuclear 644, pseudogene -1.8813 0.6210
63338 ENSG00000281131 SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 -1.8798 0.0000
63337 ENSG00000240399 ribosomal protein L37 (RPL37) pseudogene -1.8797 0.2411
63336 ENSG00000165606 DRGX dorsal root ganglia homeobox -1.8794 0.0000
63335 ENSG00000269883 novel transcript, antisense to ZDHHC22 -1.8793 0.0000
63334 ENSG00000246548 LINC02288 long intergenic non-protein coding RNA 2288 -1.8786 0.0000
63333 ENSG00000265962 GACAT2 gastric cancer associated transcript 2 -1.8785 0.0000
63332 ENSG00000284399 MIR3184 microRNA 3184 -1.8783 0.1069

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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