SHOGoiN Cell Methylome: GSM2773691
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773691 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M318 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000201311 | NA | 2.3219 | 0.0004 | |
| 2 | ENSG00000201452 | RNU6-1317P | RNA, U6 small nuclear 1317, pseudogene | 2.3219 | 0.0004 |
| 3 | ENSG00000224750 | novel transcript | 2.3219 | 0.0000 | |
| 4 | ENSG00000226837 | HMGB1P32 | high mobility group box 1 pseudogene 32 | 2.3219 | 0.0000 |
| 6 | ENSG00000236285 | NPM1P8 | nucleophosmin 1 pseudogene 8 | 2.3219 | 0.0004 |
| 7 | ENSG00000236468 | eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene | 2.3219 | 0.0000 | |
| 8 | ENSG00000237303 | HIGD1AP8 | HIG1 hypoxia inducible domain family member 1A pseudogene 8 | 2.3219 | 0.0004 |
| 9 | ENSG00000242573 | ACTR3P3 | ACTR3 pseudogene 3 | 2.3219 | 0.0000 |
| 10 | ENSG00000251427 | UDP glucuronosyltransferase 2 family pseudogene | 2.3219 | 0.0004 | |
| 63332 | ENSG00000284399 | MIR3184 | microRNA 3184 | -1.8783 | 0.1069 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000234360 | ribosomal protein S12 (RPS12) pseudogene | -1.8813 | 0.6210 | |
| 63340 | ENSG00000232699 | BDH2P1 | 3-hydroxybutyrate dehydrogenase 2, pseudogene 1 | -1.8813 | 0.6210 |
| 63339 | ENSG00000212457 | RNU6-644P | RNA, U6 small nuclear 644, pseudogene | -1.8813 | 0.6210 |
| 63338 | ENSG00000281131 | SCHLAP1 | SWI/SNF complex antagonist associated with prostate cancer 1 | -1.8798 | 0.0000 |
| 63337 | ENSG00000240399 | ribosomal protein L37 (RPL37) pseudogene | -1.8797 | 0.2411 | |
| 63336 | ENSG00000165606 | DRGX | dorsal root ganglia homeobox | -1.8794 | 0.0000 |
| 63335 | ENSG00000269883 | novel transcript, antisense to ZDHHC22 | -1.8793 | 0.0000 | |
| 63334 | ENSG00000246548 | LINC02288 | long intergenic non-protein coding RNA 2288 | -1.8786 | 0.0000 |
| 63333 | ENSG00000265962 | GACAT2 | gastric cancer associated transcript 2 | -1.8785 | 0.0000 |
| 63332 | ENSG00000284399 | MIR3184 | microRNA 3184 | -1.8783 | 0.1069 |
