Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773691

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773691


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M318Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201311 Y RNA 2.3219 0.0004
2 ENSG00000201452 RNU6-1317P RNA, U6 small nuclear 1317, pseudogene 2.3219 0.0004
3 ENSG00000224750 novel transcript 2.3219 0.0000
4 ENSG00000226837 HMGB1P32 high mobility group box 1 pseudogene 32 2.3219 0.0000
6 ENSG00000236285 NPM1P8 nucleophosmin 1 pseudogene 8 2.3219 0.0004
7 ENSG00000236468 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene 2.3219 0.0000
8 ENSG00000237303 HIGD1AP8 HIG1 hypoxia inducible domain family member 1A pseudogene 8 2.3219 0.0004
9 ENSG00000242573 ACTR3P3 ACTR3 pseudogene 3 2.3219 0.0000
10 ENSG00000251427 UDP glucuronosyltransferase 2 family pseudogene 2.3219 0.0004
63119 ENSG00000182013 PNMA8A PNMA family member 8A -1.8235 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274934 NA -1.8252 0.0000
63126 ENSG00000254578 novel transcript, antisense to CYHR1 -1.8247 0.0000
63125 ENSG00000283805 MIR636 microRNA 636 -1.8246 0.0000
63124 ENSG00000103355 PRSS33 serine protease 33 -1.8244 0.0000
63123 ENSG00000161610 HCRT hypocretin neuropeptide precursor -1.8239 0.0000
63122 ENSG00000261386 novel transcript -1.8238 0.0000
63121 ENSG00000189120 SP6 Sp6 transcription factor -1.8237 0.0000
63120 ENSG00000226717 PTPRD-AS2 PTPRD antisense RNA 2 (head to head) -1.8235 0.0020
63119 ENSG00000182013 PNMA8A PNMA family member 8A -1.8235 0.0000
10 ENSG00000251427 UDP glucuronosyltransferase 2 family pseudogene 2.3219 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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