Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773692

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773692 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M319	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000241022	NIPA2P2	NIPA2 pseudogene 2	2.8813	0.0000
2	ENSG00000201228		Y RNA	2.3219	0.0006
3	ENSG00000207275	RNU6-441P	RNA, U6 small nuclear 441, pseudogene	2.3219	0.0000
4	ENSG00000224299	MTATP6P16	MT-ATP6 pseudogene 16	2.3219	0.0006
5	ENSG00000258934	YWHAQP1	YWHAQ pseudogene 1	2.3219	0.0006
6	ENSG00000230593	PPIAP40	peptidylprolyl isomerase A pseudogene 40	2.2299	0.0000
7	ENSG00000255217	OR5J7P	olfactory receptor family 5 subfamily J member 7 pseudogene	2.2049	0.0000
8	ENSG00000256389		novel transcript	2.1510	0.0000
9	ENSG00000256994	LINC02378	long intergenic non-protein coding RNA 2378	2.1510	0.0000
10	ENSG00000181631	P2RY13	purinergic receptor P2Y13	2.0000	0.0036

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000173545	ZNF622	zinc finger protein 622	-1.7231	0.0000
63127	ENSG00000130363	RSPH3	radial spoke head 3	-1.7231	0.0000
63126	ENSG00000257853	MED15P1	mediator complex subunit 15 pseudogene 1	-1.7220	0.0001
63125	ENSG00000231566	LINC02595	long intergenic non-protein coding RNA 2595	-1.7215	0.0000
63124	ENSG00000170871	KIAA0232	KIAA0232	-1.7213	0.0000
63123	ENSG00000281333		novel transcript, antisense to KITLG	-1.7212	0.0000
63122	ENSG00000165948	IFI27L1	interferon alpha inducible protein 27 like 1	-1.7212	0.0000
63120	ENSG00000213816	CNN2P4	calponin 2 pseudogene 4	-1.7207	0.0000
63119	ENSG00000215572	ESRRAP1	estrogen-related receptor alpha pseudogene 1	-1.7203	0.0000
10	ENSG00000181631	P2RY13	purinergic receptor P2Y13	2.0000	0.0036

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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