SHOGoiN Cell Methylome: GSM2773692
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773692 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M319 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000241022 | NIPA2P2 | NIPA magnesium transporter 2 pseudogene 2 | 2.8813 | 0.0000 |
| 2 | ENSG00000201228 | NA | 2.3219 | 0.0006 | |
| 3 | ENSG00000207275 | RNU6-441P | RNA, U6 small nuclear 441, pseudogene | 2.3219 | 0.0000 |
| 4 | ENSG00000224299 | MTATP6P16 | MT-ATP6 pseudogene 16 | 2.3219 | 0.0006 |
| 5 | ENSG00000258934 | 14-3-3 protein theta (YWHAQ) pseudogene | 2.3219 | 0.0006 | |
| 6 | ENSG00000230593 | PPIAP40 | peptidylprolyl isomerase A pseudogene 40 | 2.2299 | 0.0000 |
| 7 | ENSG00000255217 | OR5J7P | olfactory receptor family 5 subfamily J member 7 pseudogene | 2.2049 | 0.0000 |
| 8 | ENSG00000256389 | novel transcript | 2.1510 | 0.0000 | |
| 9 | ENSG00000256994 | LINC02378 | long intergenic non-protein coding RNA 2378 | 2.1510 | 0.0000 |
| 10 | ENSG00000181631 | P2RY13 | purinergic receptor P2Y13 | 2.0000 | 0.0036 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000281383 | novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 | -1.7726 | 0.0000 | |
| 63340 | ENSG00000279692 | TEC | -1.7726 | 0.0000 | |
| 63339 | ENSG00000228175 | GEMIN8P4 | gem nuclear organelle associated protein 8 pseudogene 4 | -1.7725 | 0.0024 |
| 63338 | ENSG00000260159 | family with sequence similarity 108, member A1 (FAM108A1) pseudogene | -1.7723 | 0.0000 | |
| 63337 | ENSG00000147256 | ARHGAP36 | Rho GTPase activating protein 36 | -1.7720 | 0.0000 |
| 63336 | ENSG00000227179 | PGCP1 | progastricsin pseudogene 1 | -1.7720 | 0.0000 |
| 63335 | ENSG00000187231 | SESTD1 | SEC14 and spectrin domain containing 1 | -1.7717 | 0.0000 |
| 63334 | ENSG00000277767 | novel transcript | -1.7714 | 0.0000 | |
| 63333 | ENSG00000122042 | UBL3 | ubiquitin like 3 | -1.7709 | 0.0000 |
| 63332 | ENSG00000264515 | novel transcript | -1.7708 | 0.0000 |
