Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773692
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773692
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M319
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000241022
NIPA2P2
NIPA2 pseudogene 2
2.8813
0.0000
2
ENSG00000201228
Y RNA
2.3219
0.0006
3
ENSG00000207275
RNU6-441P
RNA, U6 small nuclear 441, pseudogene
2.3219
0.0000
4
ENSG00000224299
MTATP6P16
MT-ATP6 pseudogene 16
2.3219
0.0006
5
ENSG00000258934
YWHAQP1
YWHAQ pseudogene 1
2.3219
0.0006
6
ENSG00000230593
PPIAP40
peptidylprolyl isomerase A pseudogene 40
2.2299
0.0000
7
ENSG00000255217
OR5J7P
olfactory receptor family 5 subfamily J member 7 pseudogene
2.2049
0.0000
8
ENSG00000256389
novel transcript
2.1510
0.0000
9
ENSG00000256994
LINC02378
long intergenic non-protein coding RNA 2378
2.1510
0.0000
10
ENSG00000181631
P2RY13
purinergic receptor P2Y13
2.0000
0.0036
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000173545
ZNF622
zinc finger protein 622
-1.7231
0.0000
63127
ENSG00000130363
RSPH3
radial spoke head 3
-1.7231
0.0000
63126
ENSG00000257853
MED15P1
mediator complex subunit 15 pseudogene 1
-1.7220
0.0001
63125
ENSG00000231566
LINC02595
long intergenic non-protein coding RNA 2595
-1.7215
0.0000
63124
ENSG00000170871
KIAA0232
KIAA0232
-1.7213
0.0000
63123
ENSG00000281333
novel transcript, antisense to KITLG
-1.7212
0.0000
63122
ENSG00000165948
IFI27L1
interferon alpha inducible protein 27 like 1
-1.7212
0.0000
63120
ENSG00000213816
CNN2P4
calponin 2 pseudogene 4
-1.7207
0.0000
63119
ENSG00000215572
ESRRAP1
estrogen-related receptor alpha pseudogene 1
-1.7203
0.0000
10
ENSG00000181631
P2RY13
purinergic receptor P2Y13
2.0000
0.0036
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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