SHOGoiN Cell Methylome: GSM2773692

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773692


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M319Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241022 NIPA2P2 NIPA magnesium transporter 2 pseudogene 2 2.8813 0.0000
2 ENSG00000201228 NA 2.3219 0.0006
3 ENSG00000207275 RNU6-441P RNA, U6 small nuclear 441, pseudogene 2.3219 0.0000
4 ENSG00000224299 MTATP6P16 MT-ATP6 pseudogene 16 2.3219 0.0006
5 ENSG00000258934 14-3-3 protein theta (YWHAQ) pseudogene 2.3219 0.0006
6 ENSG00000230593 PPIAP40 peptidylprolyl isomerase A pseudogene 40 2.2299 0.0000
7 ENSG00000255217 OR5J7P olfactory receptor family 5 subfamily J member 7 pseudogene 2.2049 0.0000
8 ENSG00000256389 novel transcript 2.1510 0.0000
9 ENSG00000256994 LINC02378 long intergenic non-protein coding RNA 2378 2.1510 0.0000
10 ENSG00000181631 P2RY13 purinergic receptor P2Y13 2.0000 0.0036

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000281383 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -1.7726 0.0000
63340 ENSG00000279692 TEC -1.7726 0.0000
63339 ENSG00000228175 GEMIN8P4 gem nuclear organelle associated protein 8 pseudogene 4 -1.7725 0.0024
63338 ENSG00000260159 family with sequence similarity 108, member A1 (FAM108A1) pseudogene -1.7723 0.0000
63337 ENSG00000147256 ARHGAP36 Rho GTPase activating protein 36 -1.7720 0.0000
63336 ENSG00000227179 PGCP1 progastricsin pseudogene 1 -1.7720 0.0000
63335 ENSG00000187231 SESTD1 SEC14 and spectrin domain containing 1 -1.7717 0.0000
63334 ENSG00000277767 novel transcript -1.7714 0.0000
63333 ENSG00000122042 UBL3 ubiquitin like 3 -1.7709 0.0000
63332 ENSG00000264515 novel transcript -1.7708 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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