Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773692

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773692


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M319Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241022 NIPA2P2 NIPA2 pseudogene 2 2.8813 0.0000
2 ENSG00000201228 Y RNA 2.3219 0.0006
3 ENSG00000207275 RNU6-441P RNA, U6 small nuclear 441, pseudogene 2.3219 0.0000
4 ENSG00000224299 MTATP6P16 MT-ATP6 pseudogene 16 2.3219 0.0006
5 ENSG00000258934 YWHAQP1 YWHAQ pseudogene 1 2.3219 0.0006
6 ENSG00000230593 PPIAP40 peptidylprolyl isomerase A pseudogene 40 2.2299 0.0000
7 ENSG00000255217 OR5J7P olfactory receptor family 5 subfamily J member 7 pseudogene 2.2049 0.0000
8 ENSG00000256389 novel transcript 2.1510 0.0000
9 ENSG00000256994 LINC02378 long intergenic non-protein coding RNA 2378 2.1510 0.0000
10 ENSG00000181631 P2RY13 purinergic receptor P2Y13 2.0000 0.0036

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000173545 ZNF622 zinc finger protein 622 -1.7231 0.0000
63127 ENSG00000130363 RSPH3 radial spoke head 3 -1.7231 0.0000
63126 ENSG00000257853 MED15P1 mediator complex subunit 15 pseudogene 1 -1.7220 0.0001
63125 ENSG00000231566 LINC02595 long intergenic non-protein coding RNA 2595 -1.7215 0.0000
63124 ENSG00000170871 KIAA0232 KIAA0232 -1.7213 0.0000
63123 ENSG00000281333 novel transcript, antisense to KITLG -1.7212 0.0000
63122 ENSG00000165948 IFI27L1 interferon alpha inducible protein 27 like 1 -1.7212 0.0000
63120 ENSG00000213816 CNN2P4 calponin 2 pseudogene 4 -1.7207 0.0000
63119 ENSG00000215572 ESRRAP1 estrogen-related receptor alpha pseudogene 1 -1.7203 0.0000
10 ENSG00000181631 P2RY13 purinergic receptor P2Y13 2.0000 0.0036

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...