SHOGoiN Cell Methylome: GSM2773693

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773693


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M320Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 3.3219 0.0000
2 ENSG00000212829 RPS26P3 ribosomal protein S26 pseudogene 3 3.3219 0.0000
3 ENSG00000278950 novel transcript 2.7804 0.0000
4 ENSG00000243035 RN7SL810P RNA, 7SL, cytoplasmic 810, pseudogene 2.6049 0.0000
5 ENSG00000280338 tec 2.5978 0.0000
6 ENSG00000206871 RNU6-533P RNA, U6 small nuclear 533, pseudogene 2.5850 0.0001
7 ENSG00000213439 OR5AC1 olfactory receptor family 5 subfamily AC member 1 (gene/pseudogene) 2.5850 0.0001
8 ENSG00000253610 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene 2.5850 0.0001
9 ENSG00000201574 RNU1-93P RNA, U1 small nuclear 93, pseudogene 2.4189 0.0000
10 ENSG00000242689 CNTF ciliary neurotrophic factor 2.3481 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000232504 ST3GAL5-AS1 ST3GAL5 antisense RNA 1 (head to head) -2.2879 0.0000
63340 ENSG00000217718 NDUFB4P4 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 4 -2.2875 0.0000
63339 ENSG00000272980 novel transcript -2.2875 0.0000
63338 ENSG00000236548 RNF217-AS1 RNF217 antisense RNA 1 (head to head) -2.2855 0.0000
63337 ENSG00000204963 PCDHA7 protocadherin alpha 7 -2.2853 0.0000
63336 ENSG00000185838 GNB1L G protein subunit beta 1 like -2.2847 0.0000
63335 ENSG00000230798 FOXD3-AS1 FOXD3 antisense RNA 1 -2.2846 0.0000
63334 ENSG00000237819 novel transcript -2.2845 0.0000
63333 ENSG00000225761 novel transcript -2.2840 0.0000
63332 ENSG00000268836 novel transcript -2.2832 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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