Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773694

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773694 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M321	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000205328	OR6C65	olfactory receptor family 6 subfamily C member 65	3.1699	0.0000
2	ENSG00000257414	OR6C73P	olfactory receptor family 6 subfamily C member 73 pseudogene	3.1699	0.0000
3	ENSG00000228959		novel transcript	3.0000	0.0000
4	ENSG00000208308	SNORA40B	small nucleolar RNA, H/ACA box 40B	2.9358	0.0000
5	ENSG00000202125	RNU1-100P	RNA, U1 small nuclear 100, pseudogene	2.5850	0.0000
6	ENSG00000223601	EBLN1	endogenous Bornavirus like nucleoprotein 1	2.5850	0.0000
7	ENSG00000238149		ribosomal protein S15a (RPS15A) pseudogene	2.5850	0.0000
8	ENSG00000241328	LINC02070	long intergenic non-protein coding RNA 2070	2.5850	0.0000
9	ENSG00000248363		novel transcript	2.5850	0.0000
10	ENSG00000250842		novel transcript	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000207569	MIR433	microRNA 433	-2.1174	0.0000
63127	ENSG00000254574		novel transcript	-2.1169	0.0000
63126	ENSG00000185215	TNFAIP2	TNF alpha induced protein 2	-2.1162	0.0000
63124	ENSG00000284583	MIR935	microRNA 935	-2.1158	0.0000
63123	ENSG00000136450	SRSF1	serine and arginine rich splicing factor 1	-2.1155	0.0000
63122	ENSG00000244952		novel transcript	-2.1153	0.3127
63121	ENSG00000204718	CNN2P12	calponin 2 pseudogene 12	-2.1151	0.0000
63120	ENSG00000272836		novel transcript, antisense to SELO	-2.1151	0.0000
63119	ENSG00000184897	H1-10	H1.10 linker histone	-2.1149	0.0000
10	ENSG00000250842		novel transcript	2.5850	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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