SHOGoiN Cell Methylome: GSM2773694

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773694


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M321Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000205328 OR6C65 olfactory receptor family 6 subfamily C member 65 3.1699 0.0000
2 ENSG00000257414 OR6C73P olfactory receptor family 6 subfamily C member 73 pseudogene 3.1699 0.0000
3 ENSG00000228959 novel transcript 3.0000 0.0000
4 ENSG00000208308 SNORA40B small nucleolar RNA, H/ACA box 40B 2.9358 0.0000
5 ENSG00000202125 RNU1-100P RNA, U1 small nuclear 100, pseudogene 2.5850 0.0000
6 ENSG00000223601 EBLN1 endogenous Bornavirus like nucleoprotein 1 2.5850 0.0000
7 ENSG00000238149 ribosomal protein S15a (RPS15A) pseudogene 2.5850 0.0000
8 ENSG00000241328 LINC02070 long intergenic non-protein coding RNA 2070 2.5850 0.0000
9 ENSG00000248363 novel transcript 2.5850 0.0000
10 ENSG00000250842 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271711 Sin3A-associated protein, 30kDa, pseudogene. -2.1910 0.0000
63340 ENSG00000163950 SLBP stem-loop binding protein -2.1906 0.0000
63339 ENSG00000196074 SYCP2 synaptonemal complex protein 2 -2.1904 0.0000
63338 ENSG00000230157 ATP5MC1P1 ATP synthase membrane subunit c locus 1 pseudogene 1 -2.1898 0.0000
63337 ENSG00000197291 RAMP2-AS1 RAMP2 antisense RNA 1 -2.1896 0.0000
63336 ENSG00000255225 OR8B6P olfactory receptor family 8 subfamily B member 6 pseudogene -2.1887 0.2432
63335 ENSG00000230405 RPS3AP52 ribosomal protein S3a pseudogene 52 -2.1887 0.2432
63334 ENSG00000278899 novel transcript, antisense to LATS1 -2.1884 0.0006
63333 ENSG00000236875 DDX11L5 DEAD/H-box helicase 11 like 5 -2.1876 0.0000
63332 ENSG00000135245 HILPDA hypoxia inducible lipid droplet associated -2.1876 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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