SHOGoiN Cell Methylome: GSM2773694
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773694 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M321 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000205328 | OR6C65 | olfactory receptor family 6 subfamily C member 65 | 3.1699 | 0.0000 |
| 2 | ENSG00000257414 | OR6C73P | olfactory receptor family 6 subfamily C member 73 pseudogene | 3.1699 | 0.0000 |
| 3 | ENSG00000228959 | novel transcript | 3.0000 | 0.0000 | |
| 4 | ENSG00000208308 | SNORA40B | small nucleolar RNA, H/ACA box 40B | 2.9358 | 0.0000 |
| 5 | ENSG00000202125 | RNU1-100P | RNA, U1 small nuclear 100, pseudogene | 2.5850 | 0.0000 |
| 6 | ENSG00000223601 | EBLN1 | endogenous Bornavirus like nucleoprotein 1 | 2.5850 | 0.0000 |
| 7 | ENSG00000238149 | ribosomal protein S15a (RPS15A) pseudogene | 2.5850 | 0.0000 | |
| 8 | ENSG00000241328 | LINC02070 | long intergenic non-protein coding RNA 2070 | 2.5850 | 0.0000 |
| 9 | ENSG00000248363 | novel transcript | 2.5850 | 0.0000 | |
| 10 | ENSG00000250842 | novel transcript | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000271711 | Sin3A-associated protein, 30kDa, pseudogene. | -2.1910 | 0.0000 | |
| 63340 | ENSG00000163950 | SLBP | stem-loop binding protein | -2.1906 | 0.0000 |
| 63339 | ENSG00000196074 | SYCP2 | synaptonemal complex protein 2 | -2.1904 | 0.0000 |
| 63338 | ENSG00000230157 | ATP5MC1P1 | ATP synthase membrane subunit c locus 1 pseudogene 1 | -2.1898 | 0.0000 |
| 63337 | ENSG00000197291 | RAMP2-AS1 | RAMP2 antisense RNA 1 | -2.1896 | 0.0000 |
| 63336 | ENSG00000255225 | OR8B6P | olfactory receptor family 8 subfamily B member 6 pseudogene | -2.1887 | 0.2432 |
| 63335 | ENSG00000230405 | RPS3AP52 | ribosomal protein S3a pseudogene 52 | -2.1887 | 0.2432 |
| 63334 | ENSG00000278899 | novel transcript, antisense to LATS1 | -2.1884 | 0.0006 | |
| 63333 | ENSG00000236875 | DDX11L5 | DEAD/H-box helicase 11 like 5 | -2.1876 | 0.0000 |
| 63332 | ENSG00000135245 | HILPDA | hypoxia inducible lipid droplet associated | -2.1876 | 0.0000 |
