Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773694
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773694
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M321
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000205328
OR6C65
olfactory receptor family 6 subfamily C member 65
3.1699
0.0000
2
ENSG00000257414
OR6C73P
olfactory receptor family 6 subfamily C member 73 pseudogene
3.1699
0.0000
3
ENSG00000228959
novel transcript
3.0000
0.0000
4
ENSG00000208308
SNORA40B
small nucleolar RNA, H/ACA box 40B
2.9358
0.0000
5
ENSG00000202125
RNU1-100P
RNA, U1 small nuclear 100, pseudogene
2.5850
0.0000
6
ENSG00000223601
EBLN1
endogenous Bornavirus like nucleoprotein 1
2.5850
0.0000
7
ENSG00000238149
ribosomal protein S15a (RPS15A) pseudogene
2.5850
0.0000
8
ENSG00000241328
LINC02070
long intergenic non-protein coding RNA 2070
2.5850
0.0000
9
ENSG00000248363
novel transcript
2.5850
0.0000
10
ENSG00000250842
novel transcript
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000207569
MIR433
microRNA 433
-2.1174
0.0000
63127
ENSG00000254574
novel transcript
-2.1169
0.0000
63126
ENSG00000185215
TNFAIP2
TNF alpha induced protein 2
-2.1162
0.0000
63124
ENSG00000284583
MIR935
microRNA 935
-2.1158
0.0000
63123
ENSG00000136450
SRSF1
serine and arginine rich splicing factor 1
-2.1155
0.0000
63122
ENSG00000244952
novel transcript
-2.1153
0.3127
63121
ENSG00000204718
CNN2P12
calponin 2 pseudogene 12
-2.1151
0.0000
63120
ENSG00000272836
novel transcript, antisense to SELO
-2.1151
0.0000
63119
ENSG00000184897
H1-10
H1.10 linker histone
-2.1149
0.0000
10
ENSG00000250842
novel transcript
2.5850
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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