Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773695

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773695


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M322Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263581 MIR548X2 microRNA 548x-2 3.2079 0.0000
2 ENSG00000198829 SUCNR1 succinate receptor 1 2.8074 0.0000
3 ENSG00000202379 Small nucleolar RNA SNORA70 2.5850 0.0001
4 ENSG00000225289 RPL29P29 ribosomal protein L29 pseudogene 29 2.5850 0.0000
5 ENSG00000232735 ATG4AP1 autophagy related 4A cysteine peptidase pseudogene 1 2.5850 0.0001
6 ENSG00000235352 SGCEP1 SGCE pseudogene 1 2.5850 0.0001
7 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.5850 0.0001
8 ENSG00000259154 DUX4L17 double homeobox 4 like 17 (pseudogene) 2.5850 0.0001
9 ENSG00000276763 ribosomal protein L10 (RPL10) pseudogene 2.5850 0.0001
10 ENSG00000221187 MIR548M microRNA 548m 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000239975 IGKV1D-33 immunoglobulin kappa variable 1D-33 -2.0000 1.0000
63127 ENSG00000236276 NDP-AS1 NDP antisense RNA 1 -2.0000 1.0000
63126 ENSG00000235110 ribosomal protein S17 (RPS17) pseudogene -2.0000 0.0399
63125 ENSG00000232447 MTND5P3 MT-ND5 pseudogene 3 -2.0000 0.6245
63124 ENSG00000228597 MTND4P1 MT-ND4 pseudogene 1 -2.0000 0.6245
63123 ENSG00000227922 SPTLC1P5 serine palmitoyltransferase long chain base subunit 1 pseudogene 5 -2.0000 1.0000
63122 ENSG00000226708 novel transcript -2.0000 1.0000
63121 ENSG00000223625 CYCSP32 CYCS pseudogene 32 -2.0000 1.0000
63120 ENSG00000220695 RP42 homolog (RP42) pseudogene -2.0000 1.0000
63119 ENSG00000212549 RNA5SP354 RNA, 5S ribosomal pseudogene 354 -2.0000 0.6245

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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