SHOGoiN Cell Methylome: GSM2773695
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773695 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M322 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000263581 | MIR548X2 | microRNA 548x-2 | 3.2079 | 0.0000 |
| 2 | ENSG00000198829 | SUCNR1 | succinate receptor 1 | 2.8074 | 0.0000 |
| 3 | ENSG00000202379 | NA | 2.5850 | 0.0001 | |
| 4 | ENSG00000225289 | RPL29P29 | ribosomal protein L29 pseudogene 29 | 2.5850 | 0.0000 |
| 5 | ENSG00000232735 | ATG4AP1 | autophagy related 4A cysteine peptidase pseudogene 1 | 2.5850 | 0.0001 |
| 6 | ENSG00000235352 | sarcoglycan, epsilon (SGCE) pseudogene | 2.5850 | 0.0001 | |
| 7 | ENSG00000258567 | DUX4L16 | double homeobox 4 like 16 (pseudogene) | 2.5850 | 0.0001 |
| 8 | ENSG00000259154 | DUX4L17 | double homeobox 4 like 17 (pseudogene) | 2.5850 | 0.0001 |
| 9 | ENSG00000276763 | ribosomal protein L10 (RPL10) pseudogene | 2.5850 | 0.0001 | |
| 10 | ENSG00000221187 | MIR548M | microRNA 548m | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000105509 | HAS1 | hyaluronan synthase 1 | -2.0559 | 0.0000 |
| 63340 | ENSG00000269044 | novel transcript, sense intronic C19orf42 | -2.0559 | 0.0000 | |
| 63339 | ENSG00000223891 | OSER1-DT | OSER1 divergent transcript | -2.0557 | 0.0000 |
| 63338 | ENSG00000279952 | novel transcript | -2.0556 | 0.0000 | |
| 63337 | ENSG00000204961 | PCDHA9 | protocadherin alpha 9 | -2.0555 | 0.0000 |
| 63336 | ENSG00000164938 | TP53INP1 | tumor protein p53 inducible nuclear protein 1 | -2.0552 | 0.0000 |
| 63335 | ENSG00000165757 | JCAD | junctional cadherin 5 associated | -2.0551 | 0.0000 |
| 63334 | ENSG00000162004 | CCDC78 | coiled-coil domain containing 78 | -2.0548 | 0.0000 |
| 63333 | ENSG00000175785 | PRIMA1 | proline rich membrane anchor 1 | -2.0545 | 0.0000 |
| 63332 | ENSG00000107562 | CXCL12 | C-X-C motif chemokine ligand 12 | -2.0537 | 0.0000 |
