Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773695

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773695 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M322	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000263581	MIR548X2	microRNA 548x-2	3.2079	0.0000
2	ENSG00000198829	SUCNR1	succinate receptor 1	2.8074	0.0000
3	ENSG00000202379		Small nucleolar RNA SNORA70	2.5850	0.0001
4	ENSG00000225289	RPL29P29	ribosomal protein L29 pseudogene 29	2.5850	0.0000
5	ENSG00000232735	ATG4AP1	autophagy related 4A cysteine peptidase pseudogene 1	2.5850	0.0001
6	ENSG00000235352	SGCEP1	SGCE pseudogene 1	2.5850	0.0001
7	ENSG00000258567	DUX4L16	double homeobox 4 like 16 (pseudogene)	2.5850	0.0001
8	ENSG00000259154	DUX4L17	double homeobox 4 like 17 (pseudogene)	2.5850	0.0001
9	ENSG00000276763		ribosomal protein L10 (RPL10) pseudogene	2.5850	0.0001
10	ENSG00000221187	MIR548M	microRNA 548m	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000239975	IGKV1D-33	immunoglobulin kappa variable 1D-33	-2.0000	1.0000
63127	ENSG00000236276	NDP-AS1	NDP antisense RNA 1	-2.0000	1.0000
63126	ENSG00000235110		ribosomal protein S17 (RPS17) pseudogene	-2.0000	0.0399
63125	ENSG00000232447	MTND5P3	MT-ND5 pseudogene 3	-2.0000	0.6245
63124	ENSG00000228597	MTND4P1	MT-ND4 pseudogene 1	-2.0000	0.6245
63123	ENSG00000227922	SPTLC1P5	serine palmitoyltransferase long chain base subunit 1 pseudogene 5	-2.0000	1.0000
63122	ENSG00000226708		novel transcript	-2.0000	1.0000
63121	ENSG00000223625	CYCSP32	CYCS pseudogene 32	-2.0000	1.0000
63120	ENSG00000220695		RP42 homolog (RP42) pseudogene	-2.0000	1.0000
63119	ENSG00000212549	RNA5SP354	RNA, 5S ribosomal pseudogene 354	-2.0000	0.6245

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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