SHOGoiN Cell Methylome: GSM2773695

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773695


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M322Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263581 MIR548X2 microRNA 548x-2 3.2079 0.0000
2 ENSG00000198829 SUCNR1 succinate receptor 1 2.8074 0.0000
3 ENSG00000202379 NA 2.5850 0.0001
4 ENSG00000225289 RPL29P29 ribosomal protein L29 pseudogene 29 2.5850 0.0000
5 ENSG00000232735 ATG4AP1 autophagy related 4A cysteine peptidase pseudogene 1 2.5850 0.0001
6 ENSG00000235352 sarcoglycan, epsilon (SGCE) pseudogene 2.5850 0.0001
7 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.5850 0.0001
8 ENSG00000259154 DUX4L17 double homeobox 4 like 17 (pseudogene) 2.5850 0.0001
9 ENSG00000276763 ribosomal protein L10 (RPL10) pseudogene 2.5850 0.0001
10 ENSG00000221187 MIR548M microRNA 548m 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000105509 HAS1 hyaluronan synthase 1 -2.0559 0.0000
63340 ENSG00000269044 novel transcript, sense intronic C19orf42 -2.0559 0.0000
63339 ENSG00000223891 OSER1-DT OSER1 divergent transcript -2.0557 0.0000
63338 ENSG00000279952 novel transcript -2.0556 0.0000
63337 ENSG00000204961 PCDHA9 protocadherin alpha 9 -2.0555 0.0000
63336 ENSG00000164938 TP53INP1 tumor protein p53 inducible nuclear protein 1 -2.0552 0.0000
63335 ENSG00000165757 JCAD junctional cadherin 5 associated -2.0551 0.0000
63334 ENSG00000162004 CCDC78 coiled-coil domain containing 78 -2.0548 0.0000
63333 ENSG00000175785 PRIMA1 proline rich membrane anchor 1 -2.0545 0.0000
63332 ENSG00000107562 CXCL12 C-X-C motif chemokine ligand 12 -2.0537 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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