Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773695
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773695
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M322
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000263581
MIR548X2
microRNA 548x-2
3.2079
0.0000
2
ENSG00000198829
SUCNR1
succinate receptor 1
2.8074
0.0000
3
ENSG00000202379
Small nucleolar RNA SNORA70
2.5850
0.0001
4
ENSG00000225289
RPL29P29
ribosomal protein L29 pseudogene 29
2.5850
0.0000
5
ENSG00000232735
ATG4AP1
autophagy related 4A cysteine peptidase pseudogene 1
2.5850
0.0001
6
ENSG00000235352
SGCEP1
SGCE pseudogene 1
2.5850
0.0001
7
ENSG00000258567
DUX4L16
double homeobox 4 like 16 (pseudogene)
2.5850
0.0001
8
ENSG00000259154
DUX4L17
double homeobox 4 like 17 (pseudogene)
2.5850
0.0001
9
ENSG00000276763
ribosomal protein L10 (RPL10) pseudogene
2.5850
0.0001
10
ENSG00000221187
MIR548M
microRNA 548m
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000239975
IGKV1D-33
immunoglobulin kappa variable 1D-33
-2.0000
1.0000
63127
ENSG00000236276
NDP-AS1
NDP antisense RNA 1
-2.0000
1.0000
63126
ENSG00000235110
ribosomal protein S17 (RPS17) pseudogene
-2.0000
0.0399
63125
ENSG00000232447
MTND5P3
MT-ND5 pseudogene 3
-2.0000
0.6245
63124
ENSG00000228597
MTND4P1
MT-ND4 pseudogene 1
-2.0000
0.6245
63123
ENSG00000227922
SPTLC1P5
serine palmitoyltransferase long chain base subunit 1 pseudogene 5
-2.0000
1.0000
63122
ENSG00000226708
novel transcript
-2.0000
1.0000
63121
ENSG00000223625
CYCSP32
CYCS pseudogene 32
-2.0000
1.0000
63120
ENSG00000220695
RP42 homolog (RP42) pseudogene
-2.0000
1.0000
63119
ENSG00000212549
RNA5SP354
RNA, 5S ribosomal pseudogene 354
-2.0000
0.6245
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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