SHOGoiN Cell Methylome: GSM2773696

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773696


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M323Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251308 MRPS33P3 mitochondrial ribosomal protein S33 pseudogene 3 2.3219 0.0005
2 ENSG00000263424 novel transcript, antisense to DSEL 2.3219 0.0000
3 ENSG00000225935 BANF1P5 barrier to autointegration factor 1 pseudogene 5 2.0000 0.0036
4 ENSG00000230724 LINC01001 long intergenic non-protein coding RNA 1001 2.0000 0.0036
5 ENSG00000234835 PHBP13 prohibitin pseudogene 13 2.0000 0.0000
6 ENSG00000239227 pseudogene similar to part of S-phase kinase-associated protein 2 (p45) SKP2 2.0000 0.0000
7 ENSG00000248984 novel transcript 2.0000 0.0036
8 ENSG00000249052 novel transcript 2.0000 0.0036
9 ENSG00000252116 RNU4ATAC4P RNA, U4atac small nuclear 4, pseudogene 2.0000 0.0036
63332 ENSG00000247287 novel transcript, antisense to PRKCH -1.7989 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000168152 THAP9 THAP domain containing 9 -1.8002 0.0000
63340 ENSG00000186732 MPPED1 metallophosphoesterase domain containing 1 -1.8002 0.0000
63339 ENSG00000147604 RPL7 ribosomal protein L7 -1.8001 0.0000
63338 ENSG00000239213 NCK1-DT NCK1 divergent transcript -1.8001 0.0000
63337 ENSG00000251350 LINC02475 long intergenic non-protein coding RNA 2475 -1.8000 0.2402
63336 ENSG00000225882 LINC01456 long intergenic non-protein coding RNA 1456 -1.8000 0.0028
63335 ENSG00000278901 novel transcript, antisense to PCDHA13 -1.7992 0.0000
63334 ENSG00000239389 PCDHA13 protocadherin alpha 13 -1.7992 0.0000
63333 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -1.7991 0.0000
63332 ENSG00000247287 novel transcript, antisense to PRKCH -1.7989 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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