Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773696
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773696
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M323
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000251308
MRPS33P3
mitochondrial ribosomal protein S33 pseudogene 3
2.3219
0.0005
2
ENSG00000263424
novel transcript, antisense to DSEL
2.3219
0.0000
3
ENSG00000225935
BANF1P5
BANF1 pseudogene 5
2.0000
0.0036
4
ENSG00000230724
LINC01001
long intergenic non-protein coding RNA 1001
2.0000
0.0036
5
ENSG00000234835
PHBP13
prohibitin pseudogene 13
2.0000
0.0000
6
ENSG00000239227
pseudogene similar to part of S-phase kinase-associated protein 2 (p45) SKP2
2.0000
0.0000
7
ENSG00000248984
novel transcript
2.0000
0.0036
8
ENSG00000249052
novel transcript
2.0000
0.0036
9
ENSG00000252116
RNU4ATAC4P
RNA, U4atac small nuclear 4, pseudogene
2.0000
0.0036
63119
ENSG00000172247
C1QTNF4
C1q and TNF related 4
-1.7430
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000235301
HLA-Z
major histocompatibility complex, class I, Z (pseudogene)
-1.7453
0.0000
63127
ENSG00000233608
TWIST2
twist family bHLH transcription factor 2
-1.7451
0.0000
63126
ENSG00000157870
PRXL2B
peroxiredoxin like 2B
-1.7446
0.0000
63125
ENSG00000182831
C16orf72
chromosome 16 open reading frame 72
-1.7440
0.0000
63124
ENSG00000261717
novel TMEM170A-CFDP1 readthrough protein
-1.7438
0.0000
63123
ENSG00000232760
novel pseudogene
-1.7438
0.0000
63122
ENSG00000245330
novel transcript
-1.7437
0.0000
63121
ENSG00000166130
IKBIP
IKBKB interacting protein
-1.7436
0.0000
63120
ENSG00000188846
RPL14
ribosomal protein L14
-1.7435
0.0000
63119
ENSG00000172247
C1QTNF4
C1q and TNF related 4
-1.7430
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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