Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773696

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773696


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M323Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251308 MRPS33P3 mitochondrial ribosomal protein S33 pseudogene 3 2.3219 0.0005
2 ENSG00000263424 novel transcript, antisense to DSEL 2.3219 0.0000
3 ENSG00000225935 BANF1P5 BANF1 pseudogene 5 2.0000 0.0036
4 ENSG00000230724 LINC01001 long intergenic non-protein coding RNA 1001 2.0000 0.0036
5 ENSG00000234835 PHBP13 prohibitin pseudogene 13 2.0000 0.0000
6 ENSG00000239227 pseudogene similar to part of S-phase kinase-associated protein 2 (p45) SKP2 2.0000 0.0000
7 ENSG00000248984 novel transcript 2.0000 0.0036
8 ENSG00000249052 novel transcript 2.0000 0.0036
9 ENSG00000252116 RNU4ATAC4P RNA, U4atac small nuclear 4, pseudogene 2.0000 0.0036
63119 ENSG00000172247 C1QTNF4 C1q and TNF related 4 -1.7430 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000235301 HLA-Z major histocompatibility complex, class I, Z (pseudogene) -1.7453 0.0000
63127 ENSG00000233608 TWIST2 twist family bHLH transcription factor 2 -1.7451 0.0000
63126 ENSG00000157870 PRXL2B peroxiredoxin like 2B -1.7446 0.0000
63125 ENSG00000182831 C16orf72 chromosome 16 open reading frame 72 -1.7440 0.0000
63124 ENSG00000261717 novel TMEM170A-CFDP1 readthrough protein -1.7438 0.0000
63123 ENSG00000232760 novel pseudogene -1.7438 0.0000
63122 ENSG00000245330 novel transcript -1.7437 0.0000
63121 ENSG00000166130 IKBIP IKBKB interacting protein -1.7436 0.0000
63120 ENSG00000188846 RPL14 ribosomal protein L14 -1.7435 0.0000
63119 ENSG00000172247 C1QTNF4 C1q and TNF related 4 -1.7430 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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