SHOGoiN Cell Methylome: GSM2773696
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773696 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M323 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000251308 | MRPS33P3 | mitochondrial ribosomal protein S33 pseudogene 3 | 2.3219 | 0.0005 |
| 2 | ENSG00000263424 | novel transcript, antisense to DSEL | 2.3219 | 0.0000 | |
| 3 | ENSG00000225935 | BANF1P5 | barrier to autointegration factor 1 pseudogene 5 | 2.0000 | 0.0036 |
| 4 | ENSG00000230724 | LINC01001 | long intergenic non-protein coding RNA 1001 | 2.0000 | 0.0036 |
| 5 | ENSG00000234835 | PHBP13 | prohibitin pseudogene 13 | 2.0000 | 0.0000 |
| 6 | ENSG00000239227 | pseudogene similar to part of S-phase kinase-associated protein 2 (p45) SKP2 | 2.0000 | 0.0000 | |
| 7 | ENSG00000248984 | novel transcript | 2.0000 | 0.0036 | |
| 8 | ENSG00000249052 | novel transcript | 2.0000 | 0.0036 | |
| 9 | ENSG00000252116 | RNU4ATAC4P | RNA, U4atac small nuclear 4, pseudogene | 2.0000 | 0.0036 |
| 63332 | ENSG00000247287 | novel transcript, antisense to PRKCH | -1.7989 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000168152 | THAP9 | THAP domain containing 9 | -1.8002 | 0.0000 |
| 63340 | ENSG00000186732 | MPPED1 | metallophosphoesterase domain containing 1 | -1.8002 | 0.0000 |
| 63339 | ENSG00000147604 | RPL7 | ribosomal protein L7 | -1.8001 | 0.0000 |
| 63338 | ENSG00000239213 | NCK1-DT | NCK1 divergent transcript | -1.8001 | 0.0000 |
| 63337 | ENSG00000251350 | LINC02475 | long intergenic non-protein coding RNA 2475 | -1.8000 | 0.2402 |
| 63336 | ENSG00000225882 | LINC01456 | long intergenic non-protein coding RNA 1456 | -1.8000 | 0.0028 |
| 63335 | ENSG00000278901 | novel transcript, antisense to PCDHA13 | -1.7992 | 0.0000 | |
| 63334 | ENSG00000239389 | PCDHA13 | protocadherin alpha 13 | -1.7992 | 0.0000 |
| 63333 | ENSG00000253563 | NKX2-1-AS1 | NKX2-1 antisense RNA 1 | -1.7991 | 0.0000 |
| 63332 | ENSG00000247287 | novel transcript, antisense to PRKCH | -1.7989 | 0.0000 |
