Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773696

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773696 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M323	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251308	MRPS33P3	mitochondrial ribosomal protein S33 pseudogene 3	2.3219	0.0005
2	ENSG00000263424		novel transcript, antisense to DSEL	2.3219	0.0000
3	ENSG00000225935	BANF1P5	BANF1 pseudogene 5	2.0000	0.0036
4	ENSG00000230724	LINC01001	long intergenic non-protein coding RNA 1001	2.0000	0.0036
5	ENSG00000234835	PHBP13	prohibitin pseudogene 13	2.0000	0.0000
6	ENSG00000239227		pseudogene similar to part of S-phase kinase-associated protein 2 (p45) SKP2	2.0000	0.0000
7	ENSG00000248984		novel transcript	2.0000	0.0036
8	ENSG00000249052		novel transcript	2.0000	0.0036
9	ENSG00000252116	RNU4ATAC4P	RNA, U4atac small nuclear 4, pseudogene	2.0000	0.0036
63119	ENSG00000172247	C1QTNF4	C1q and TNF related 4	-1.7430	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000235301	HLA-Z	major histocompatibility complex, class I, Z (pseudogene)	-1.7453	0.0000
63127	ENSG00000233608	TWIST2	twist family bHLH transcription factor 2	-1.7451	0.0000
63126	ENSG00000157870	PRXL2B	peroxiredoxin like 2B	-1.7446	0.0000
63125	ENSG00000182831	C16orf72	chromosome 16 open reading frame 72	-1.7440	0.0000
63124	ENSG00000261717		novel TMEM170A-CFDP1 readthrough protein	-1.7438	0.0000
63123	ENSG00000232760		novel pseudogene	-1.7438	0.0000
63122	ENSG00000245330		novel transcript	-1.7437	0.0000
63121	ENSG00000166130	IKBIP	IKBKB interacting protein	-1.7436	0.0000
63120	ENSG00000188846	RPL14	ribosomal protein L14	-1.7435	0.0000
63119	ENSG00000172247	C1QTNF4	C1q and TNF related 4	-1.7430	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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