Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773697

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773697


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M324Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283371 IQ motif containing K (IQCK) pseudogene 1.5850 0.0202
2 ENSG00000214405 RAP1BP2 RAP1B pseudogene 2 1.4680 0.0000
3 ENSG00000232239 RBPJP5 RBPJ pseudogene 5 1.2925 0.0000
4 ENSG00000236284 VN1R31P vomeronasal 1 receptor 31 pseudogene 1.1950 0.0004
5 ENSG00000278981 novel transcript, antisense to DCHS2 1.1489 0.0000
6 ENSG00000273550 novel transcript 1.1462 0.0001
7 ENSG00000241104 CEACAMP10 CEA cell adhesion molecule pseudogene 10 1.1218 0.0000
9 ENSG00000245711 NADK2-AS1 NADK2 antisense RNA 1 1.0608 0.0000
10 ENSG00000235869 ribosomal protein S26 (RPS26) pseudogene 1.0518 0.0000
63119 ENSG00000186897 C1QL4 complement C1q like 4 -1.7282 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000238419 RNU7-186P RNA, U7 small nuclear 186 pseudogene -1.7291 0.0000
63127 ENSG00000261798 novel transcript, antisense to BMP8B -1.7291 0.0000
63126 ENSG00000100075 SLC25A1 solute carrier family 25 member 1 -1.7289 0.0000
63125 ENSG00000146054 TRIM7 tripartite motif containing 7 -1.7288 0.0000
63124 ENSG00000284346 MIR940 microRNA 940 -1.7287 0.0000
63123 ENSG00000117533 VAMP4 vesicle associated membrane protein 4 -1.7287 0.0000
63122 ENSG00000154342 WNT3A Wnt family member 3A -1.7285 0.0000
63121 ENSG00000174951 FUT1 fucosyltransferase 1 (H blood group) -1.7285 0.0000
63120 ENSG00000111052 LIN7A lin-7 homolog A, crumbs cell polarity complex component -1.7283 0.0000
63119 ENSG00000186897 C1QL4 complement C1q like 4 -1.7282 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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