SHOGoiN Cell Methylome: GSM2773697

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773697


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M324Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283371 IQ motif containing K (IQCK) pseudogene 1.5850 0.0202
2 ENSG00000214405 RAP1BP2 RAP1B, member of RAS oncogene family pseudogene 2 1.4680 0.0000
3 ENSG00000232239 RBPJP5 RBPJ pseudogene 5 1.2925 0.0000
4 ENSG00000236284 VN1R31P vomeronasal 1 receptor 31 pseudogene 1.1950 0.0004
5 ENSG00000278981 novel transcript, antisense to DCHS2 1.1489 0.0000
6 ENSG00000273550 novel transcript 1.1462 0.0001
7 ENSG00000241104 CEACAMP10 carcinoembryonic antigen related cell adhesion molecule pseudogene 10 1.1218 0.0000
9 ENSG00000245711 NADK2-AS1 NADK2 antisense RNA 1 1.0608 0.0000
10 ENSG00000235869 ribosomal protein S26 (RPS26) pseudogene 1.0518 0.0000
63332 ENSG00000179698 WDR97 WD repeat domain 97 -1.7713 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000221953 C1orf229 chromosome 1 open reading frame 229 -1.7736 0.0000
63340 ENSG00000260790 novel transcript, antisense to CDR2 -1.7734 0.0000
63339 ENSG00000105550 FGF21 fibroblast growth factor 21 -1.7727 0.0000
63338 ENSG00000100426 ZBED4 zinc finger BED-type containing 4 -1.7727 0.0000
63337 ENSG00000279472 novel transcript -1.7727 0.0000
63336 ENSG00000233237 LINC00472 long intergenic non-protein coding RNA 472 -1.7727 0.0000
63335 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -1.7725 0.0000
63334 ENSG00000279036 TEC -1.7721 0.0000
63333 ENSG00000260992 DOCK9-DT DOCK9 divergent transcript -1.7718 0.0000
63332 ENSG00000179698 WDR97 WD repeat domain 97 -1.7713 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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