Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773698

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773698 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M325	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000273940	RN7SL722P	RNA, 7SL, cytoplasmic 722, pseudogene	1.7925	0.0001
2	ENSG00000235901		family with sequence similarity 190, member B (FAM190B) pseudogene	1.5850	0.0000
3	ENSG00000278551	RNU6-368P	RNA, U6 small nuclear 368, pseudogene	1.5850	0.0006
4	ENSG00000200733		NA	1.2750	0.0000
5	ENSG00000263513	FAM72C	family with sequence similarity 72 member C	1.2438	0.0000
7	ENSG00000199168	MIR374A	microRNA 374a	1.1294	0.0000
8	ENSG00000207820	MIR545	microRNA 545	1.1266	0.0000
9	ENSG00000199920	RNU4-44P	RNA, U4 small nuclear 44, pseudogene	1.1117	0.0000
10	ENSG00000235558	GUSBP17	GUSB pseudogene 17	1.0839	0.0000
63119	ENSG00000235760	MSH2-OT1	MSH2 overlapping transcript 1	-1.8378	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000153094	BCL2L11	BCL2 like 11	-1.8390	0.0000
63127	ENSG00000148730	EIF4EBP2	eukaryotic translation initiation factor 4E binding protein 2	-1.8389	0.0000
63125	ENSG00000095596	CYP26A1	cytochrome P450 family 26 subfamily A member 1	-1.8386	0.0000
63124	ENSG00000105509	HAS1	hyaluronan synthase 1	-1.8386	0.0000
63123	ENSG00000112110	MRPL18	mitochondrial ribosomal protein L18	-1.8385	0.0000
63122	ENSG00000187838	PLSCR3	phospholipid scramblase 3	-1.8385	0.0000
63121	ENSG00000237950		novel transcript	-1.8382	0.0000
63120	ENSG00000272434		novel transcript, antisense to IMPDH2 and QRICH1	-1.8379	0.0000
63119	ENSG00000235760	MSH2-OT1	MSH2 overlapping transcript 1	-1.8378	0.0000
10	ENSG00000235558	GUSBP17	GUSB pseudogene 17	1.0839	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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