SHOGoiN Cell Methylome: GSM2773698

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773698


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M325Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273940 RN7SL722P RNA, 7SL, cytoplasmic 722, pseudogene 1.7925 0.0001
2 ENSG00000235901 family with sequence similarity 190, member B (FAM190B) pseudogene 1.5850 0.0000
3 ENSG00000278551 RNU6-368P RNA, U6 small nuclear 368, pseudogene 1.5850 0.0006
4 ENSG00000200733 NA 1.2750 0.0000
5 ENSG00000263513 FAM72C family with sequence similarity 72 member C 1.2438 0.0000
7 ENSG00000199168 MIR374A microRNA 374a 1.1294 0.0000
8 ENSG00000207820 MIR545 microRNA 545 1.1266 0.0000
9 ENSG00000199920 RNU4-44P RNA, U4 small nuclear 44, pseudogene 1.1117 0.0000
10 ENSG00000235558 glucuronidase, beta (GUSB) pseudogene 1.0839 0.0000
63332 ENSG00000258731 novel transcript, antisense to DDHD1 -1.8842 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000125084 WNT1 Wnt family member 1 -1.8860 0.0000
63340 ENSG00000176903 PNMA1 PNMA family member 1 -1.8856 0.0000
63339 ENSG00000248874 C5orf17 chromosome 5 open reading frame 17 (putative) -1.8855 0.0000
63338 ENSG00000179632 MAF1 MAF1 homolog, negative regulator of RNA polymerase III -1.8855 0.0000
63337 ENSG00000272644 novel transcript -1.8853 0.0000
63336 ENSG00000180730 SHISA2 shisa family member 2 -1.8852 0.0000
63335 ENSG00000141522 ARHGDIA Rho GDP dissociation inhibitor alpha -1.8849 0.0000
63334 ENSG00000272432 novel transcript -1.8847 0.0000
63333 ENSG00000258976 novel transcript -1.8844 0.0000
63332 ENSG00000258731 novel transcript, antisense to DDHD1 -1.8842 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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