SHOGoiN Cell Methylome: GSM2773698
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773698 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M325 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000273940 | RN7SL722P | RNA, 7SL, cytoplasmic 722, pseudogene | 1.7925 | 0.0001 |
| 2 | ENSG00000235901 | family with sequence similarity 190, member B (FAM190B) pseudogene | 1.5850 | 0.0000 | |
| 3 | ENSG00000278551 | RNU6-368P | RNA, U6 small nuclear 368, pseudogene | 1.5850 | 0.0006 |
| 4 | ENSG00000200733 | NA | 1.2750 | 0.0000 | |
| 5 | ENSG00000263513 | FAM72C | family with sequence similarity 72 member C | 1.2438 | 0.0000 |
| 7 | ENSG00000199168 | MIR374A | microRNA 374a | 1.1294 | 0.0000 |
| 8 | ENSG00000207820 | MIR545 | microRNA 545 | 1.1266 | 0.0000 |
| 9 | ENSG00000199920 | RNU4-44P | RNA, U4 small nuclear 44, pseudogene | 1.1117 | 0.0000 |
| 10 | ENSG00000235558 | glucuronidase, beta (GUSB) pseudogene | 1.0839 | 0.0000 | |
| 63332 | ENSG00000258731 | novel transcript, antisense to DDHD1 | -1.8842 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000125084 | WNT1 | Wnt family member 1 | -1.8860 | 0.0000 |
| 63340 | ENSG00000176903 | PNMA1 | PNMA family member 1 | -1.8856 | 0.0000 |
| 63339 | ENSG00000248874 | C5orf17 | chromosome 5 open reading frame 17 (putative) | -1.8855 | 0.0000 |
| 63338 | ENSG00000179632 | MAF1 | MAF1 homolog, negative regulator of RNA polymerase III | -1.8855 | 0.0000 |
| 63337 | ENSG00000272644 | novel transcript | -1.8853 | 0.0000 | |
| 63336 | ENSG00000180730 | SHISA2 | shisa family member 2 | -1.8852 | 0.0000 |
| 63335 | ENSG00000141522 | ARHGDIA | Rho GDP dissociation inhibitor alpha | -1.8849 | 0.0000 |
| 63334 | ENSG00000272432 | novel transcript | -1.8847 | 0.0000 | |
| 63333 | ENSG00000258976 | novel transcript | -1.8844 | 0.0000 | |
| 63332 | ENSG00000258731 | novel transcript, antisense to DDHD1 | -1.8842 | 0.0000 |
