Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773698
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773698
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M325
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000273940
RN7SL722P
RNA, 7SL, cytoplasmic 722, pseudogene
1.7925
0.0001
2
ENSG00000235901
family with sequence similarity 190, member B (FAM190B) pseudogene
1.5850
0.0000
3
ENSG00000278551
RNU6-368P
RNA, U6 small nuclear 368, pseudogene
1.5850
0.0006
4
ENSG00000200733
NA
1.2750
0.0000
5
ENSG00000263513
FAM72C
family with sequence similarity 72 member C
1.2438
0.0000
7
ENSG00000199168
MIR374A
microRNA 374a
1.1294
0.0000
8
ENSG00000207820
MIR545
microRNA 545
1.1266
0.0000
9
ENSG00000199920
RNU4-44P
RNA, U4 small nuclear 44, pseudogene
1.1117
0.0000
10
ENSG00000235558
GUSBP17
GUSB pseudogene 17
1.0839
0.0000
63119
ENSG00000235760
MSH2-OT1
MSH2 overlapping transcript 1
-1.8378
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000153094
BCL2L11
BCL2 like 11
-1.8390
0.0000
63127
ENSG00000148730
EIF4EBP2
eukaryotic translation initiation factor 4E binding protein 2
-1.8389
0.0000
63125
ENSG00000095596
CYP26A1
cytochrome P450 family 26 subfamily A member 1
-1.8386
0.0000
63124
ENSG00000105509
HAS1
hyaluronan synthase 1
-1.8386
0.0000
63123
ENSG00000112110
MRPL18
mitochondrial ribosomal protein L18
-1.8385
0.0000
63122
ENSG00000187838
PLSCR3
phospholipid scramblase 3
-1.8385
0.0000
63121
ENSG00000237950
novel transcript
-1.8382
0.0000
63120
ENSG00000272434
novel transcript, antisense to IMPDH2 and QRICH1
-1.8379
0.0000
63119
ENSG00000235760
MSH2-OT1
MSH2 overlapping transcript 1
-1.8378
0.0000
10
ENSG00000235558
GUSBP17
GUSB pseudogene 17
1.0839
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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