Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773698

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773698


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M325Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273940 RN7SL722P RNA, 7SL, cytoplasmic 722, pseudogene 1.7925 0.0001
2 ENSG00000235901 family with sequence similarity 190, member B (FAM190B) pseudogene 1.5850 0.0000
3 ENSG00000278551 RNU6-368P RNA, U6 small nuclear 368, pseudogene 1.5850 0.0006
4 ENSG00000200733 NA 1.2750 0.0000
5 ENSG00000263513 FAM72C family with sequence similarity 72 member C 1.2438 0.0000
7 ENSG00000199168 MIR374A microRNA 374a 1.1294 0.0000
8 ENSG00000207820 MIR545 microRNA 545 1.1266 0.0000
9 ENSG00000199920 RNU4-44P RNA, U4 small nuclear 44, pseudogene 1.1117 0.0000
10 ENSG00000235558 GUSBP17 GUSB pseudogene 17 1.0839 0.0000
63119 ENSG00000235760 MSH2-OT1 MSH2 overlapping transcript 1 -1.8378 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000153094 BCL2L11 BCL2 like 11 -1.8390 0.0000
63127 ENSG00000148730 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -1.8389 0.0000
63125 ENSG00000095596 CYP26A1 cytochrome P450 family 26 subfamily A member 1 -1.8386 0.0000
63124 ENSG00000105509 HAS1 hyaluronan synthase 1 -1.8386 0.0000
63123 ENSG00000112110 MRPL18 mitochondrial ribosomal protein L18 -1.8385 0.0000
63122 ENSG00000187838 PLSCR3 phospholipid scramblase 3 -1.8385 0.0000
63121 ENSG00000237950 novel transcript -1.8382 0.0000
63120 ENSG00000272434 novel transcript, antisense to IMPDH2 and QRICH1 -1.8379 0.0000
63119 ENSG00000235760 MSH2-OT1 MSH2 overlapping transcript 1 -1.8378 0.0000
10 ENSG00000235558 GUSBP17 GUSB pseudogene 17 1.0839 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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