SHOGoiN Cell Methylome: GSM2773699

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773699


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M326Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249052 novel transcript 3.0000 0.0000
2 ENSG00000200840 RNU6-82P RNA, U6 small nuclear 82, pseudogene 2.8074 0.0000
3 ENSG00000229254 OR8C1P olfactory receptor family 8 subfamily C member 1 pseudogene 2.8074 0.0000
4 ENSG00000200480 SNORD114-28 small nucleolar RNA, C/D box 114-28 2.5850 0.0001
5 ENSG00000201689 SNORD114-29 small nucleolar RNA, C/D box 114-29 2.5850 0.0001
6 ENSG00000213492 NT5C3AP1 5'-nucleotidase, cytosolic IIIA pseudogene 1 2.5850 0.0001
7 ENSG00000228086 novel transcript 2.5850 0.0000
8 ENSG00000229379 novel transcript 2.5850 0.0000
9 ENSG00000231244 PSMC1P3 proteasome 26S subunit, ATPase 1 pseudogene 3 2.5850 0.0000
10 ENSG00000275006 NA 2.3460 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000258520 novel transcript -2.3439 0.0000
63340 ENSG00000154639 CXADR CXADR Ig-like cell adhesion molecule -2.3436 0.0000
63339 ENSG00000168267 PTF1A pancreas associated transcription factor 1a -2.3432 0.0000
63338 ENSG00000278012 novel transcript, sense intronic to XKR7 -2.3430 0.0000
63337 ENSG00000224257 VWC2L-IT1 VWC2L intronic transcript 1 -2.3430 0.0000
63336 ENSG00000137571 SLCO5A1 solute carrier organic anion transporter family member 5A1 -2.3423 0.0000
63335 ENSG00000267778 novel transcript -2.3422 0.0000
63334 ENSG00000186493 C5orf38 chromosome 5 open reading frame 38 -2.3422 0.0000
63333 ENSG00000284439 TAF11L3 TATA-box binding protein associated factor 11 like 3 -2.3420 0.0000
63332 ENSG00000269925 novel transcript, sense intronic to VAMP3 -2.3413 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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