Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773699

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773699


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M326Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249052 novel transcript 3.0000 0.0000
2 ENSG00000200840 RNU6-82P RNA, U6 small nuclear 82, pseudogene 2.8074 0.0000
3 ENSG00000229254 OR8C1P olfactory receptor family 8 subfamily C member 1 pseudogene 2.8074 0.0000
4 ENSG00000200480 SNORD114-28 small nucleolar RNA, C/D box 114-28 2.5850 0.0001
5 ENSG00000201689 SNORD114-29 small nucleolar RNA, C/D box 114-29 2.5850 0.0001
6 ENSG00000213492 NT5C3AP1 NT5C3A pseudogene 1 2.5850 0.0001
7 ENSG00000228086 novel transcript 2.5850 0.0000
8 ENSG00000229379 novel transcript 2.5850 0.0000
9 ENSG00000231244 PSMC1P3 proteasome 26S subunit, ATPase 1 pseudogene 3 2.5850 0.0000
10 ENSG00000275006 NA 2.3460 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000125827 TMX4 thioredoxin related transmembrane protein 4 -2.3079 0.0000
63220 ENSG00000118402 ELOVL4 ELOVL fatty acid elongase 4 -2.3077 0.0000
63219 ENSG00000201699 RNVU1-24 RNA, variant U1 small nuclear 24 -2.3076 0.0003
63218 ENSG00000145808 ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 -2.3076 0.0000
63217 ENSG00000280411 IGHV1-69D immunoglobulin heavy variable 1-69D -2.3072 0.0938
63216 ENSG00000213642 novel pseudogene -2.3071 0.0000
63215 ENSG00000277469 NA -2.3067 0.0000
63214 ENSG00000232448 novel transcript -2.3067 0.0000
63213 ENSG00000272384 novel transcript -2.3059 0.0000
63212 ENSG00000226648 PLCG1-AS1 PLCG1 antisense RNA 1 -2.3056 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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