Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773699

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773699


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M326Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249052 novel transcript 3.0000 0.0000
2 ENSG00000200840 RNU6-82P RNA, U6 small nuclear 82, pseudogene 2.8074 0.0000
3 ENSG00000229254 OR8C1P olfactory receptor family 8 subfamily C member 1 pseudogene 2.8074 0.0000
4 ENSG00000200480 SNORD114-28 small nucleolar RNA, C/D box 114-28 2.5850 0.0001
5 ENSG00000201689 SNORD114-29 small nucleolar RNA, C/D box 114-29 2.5850 0.0001
6 ENSG00000213492 NT5C3AP1 NT5C3A pseudogene 1 2.5850 0.0001
7 ENSG00000228086 novel transcript 2.5850 0.0000
8 ENSG00000229379 novel transcript 2.5850 0.0000
9 ENSG00000231244 PSMC1P3 proteasome 26S subunit, ATPase 1 pseudogene 3 2.5850 0.0000
10 ENSG00000275006 Y RNA 2.3460 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000279172 TEC -2.2951 0.0000
63172 ENSG00000275017 developmental pluripotency associated 3 (DPPA3) pseudogene -2.2946 0.0000
63171 ENSG00000180155 LYNX1 Ly6/neurotoxin 1 -2.2943 0.0000
63170 ENSG00000260159 family with sequence similarity 108, member A1 (FAM108A1) pseudogene -2.2942 0.0000
63169 ENSG00000114019 AMOTL2 angiomotin like 2 -2.2933 0.0000
63168 ENSG00000209042 SNORD12C small nucleolar RNA, C/D box 12C -2.2933 0.0000
63167 ENSG00000142700 DMRTA2 DMRT like family A2 -2.2931 0.0000
63166 ENSG00000277677 Metazoan signal recognition particle RNA -2.2925 0.3711
63165 ENSG00000273129 PACERR PTGS2 antisense NFKB1 complex-mediated expression regulator RNA -2.2922 0.0000
63164 ENSG00000124813 RUNX2 RUNX family transcription factor 2 -2.2922 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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