Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773700
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773700
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M327
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000236085
ACTG1P4
actin gamma 1 pseudogene 4
3.1699
0.0000
2
ENSG00000258536
FKBP1BP1
FKBP prolyl isomerase 1B pseudogene 1
3.1699
0.0000
3
ENSG00000275174
U6 spliceosomal RNA
3.0000
0.0000
4
ENSG00000249230
CDH12P2
cadherin 12 pseudogene 2
2.9288
0.0000
5
ENSG00000233646
OR52T1P
olfactory receptor family 52 subfamily T member 1 pseudogene
2.8215
0.0000
6
ENSG00000230320
BEND7P1
BEN domain containing 7 pseudogene 1
2.8074
0.0000
7
ENSG00000237750
KCNH7-AS1
KCNH7 antisense RNA 1
2.8074
0.0000
8
ENSG00000252198
Y RNA
2.8074
0.0000
9
ENSG00000237539
novel pseudogene
2.7113
0.0000
10
ENSG00000200120
Y RNA
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000138311
ZNF365
zinc finger protein 365
-2.3649
0.0000
63172
ENSG00000086619
ERO1B
endoplasmic reticulum oxidoreductase 1 beta
-2.3649
0.0000
63171
ENSG00000105447
GRWD1
glutamate rich WD repeat containing 1
-2.3648
0.0000
63170
ENSG00000218586
Rho GTPase activating protein 5 (ARHGAP5) pseudogene
-2.3645
0.0000
63169
ENSG00000264813
novel protein
-2.3645
0.0000
63168
ENSG00000185950
IRS2
insulin receptor substrate 2
-2.3644
0.0000
63167
ENSG00000251503
CENPS-CORT
CENPS-CORT readthrough
-2.3638
0.0000
63166
ENSG00000275532
novel transcript, antisense to MLLT6
-2.3636
0.0000
63165
ENSG00000206602
SNORD58A
small nucleolar RNA, C/D box 58A
-2.3636
0.0000
63164
ENSG00000235852
novel transcript
-2.3636
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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