Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773700

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773700


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M327Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 3.1699 0.0000
2 ENSG00000258536 FKBP1BP1 FKBP prolyl isomerase 1B pseudogene 1 3.1699 0.0000
3 ENSG00000275174 NA 3.0000 0.0000
4 ENSG00000249230 CDH12P2 cadherin 12 pseudogene 2 2.9288 0.0000
5 ENSG00000233646 OR52T1P olfactory receptor family 52 subfamily T member 1 pseudogene 2.8215 0.0000
6 ENSG00000230320 BEND7P1 BEN domain containing 7 pseudogene 1 2.8074 0.0000
7 ENSG00000237750 KCNH7-AS1 KCNH7 antisense RNA 1 2.8074 0.0000
8 ENSG00000252198 NA 2.8074 0.0000
9 ENSG00000237539 novel pseudogene 2.7113 0.0000
10 ENSG00000200120 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000267095 novel transcript -2.3792 0.0000
63220 ENSG00000068120 COASY Coenzyme A synthase -2.3788 0.0000
63219 ENSG00000283888 MIR1469 microRNA 1469 -2.3788 0.0000
63218 ENSG00000175895 PLEKHF2 pleckstrin homology and FYVE domain containing 2 -2.3787 0.0000
63217 ENSG00000280022 TEC -2.3783 0.0000
63216 ENSG00000227825 SLC9A7P1 solute carrier family 9 member 7 pseudogene 1 -2.3781 0.0000
63215 ENSG00000166347 CYB5A cytochrome b5 type A -2.3774 0.0000
63214 ENSG00000254028 novel transcript -2.3771 0.0000
63213 ENSG00000284299 novel protein -2.3766 0.0000
63212 ENSG00000249690 novel transcript, antisense to LRBA -2.3764 0.1537

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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