Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773700

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773700 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M327	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000236085	ACTG1P4	actin gamma 1 pseudogene 4	3.1699	0.0000
2	ENSG00000258536	FKBP1BP1	FKBP prolyl isomerase 1B pseudogene 1	3.1699	0.0000
3	ENSG00000275174		U6 spliceosomal RNA	3.0000	0.0000
4	ENSG00000249230	CDH12P2	cadherin 12 pseudogene 2	2.9288	0.0000
5	ENSG00000233646	OR52T1P	olfactory receptor family 52 subfamily T member 1 pseudogene	2.8215	0.0000
6	ENSG00000230320	BEND7P1	BEN domain containing 7 pseudogene 1	2.8074	0.0000
7	ENSG00000237750	KCNH7-AS1	KCNH7 antisense RNA 1	2.8074	0.0000
8	ENSG00000252198		Y RNA	2.8074	0.0000
9	ENSG00000237539		novel pseudogene	2.7113	0.0000
10	ENSG00000200120		Y RNA	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000138311	ZNF365	zinc finger protein 365	-2.3649	0.0000
63172	ENSG00000086619	ERO1B	endoplasmic reticulum oxidoreductase 1 beta	-2.3649	0.0000
63171	ENSG00000105447	GRWD1	glutamate rich WD repeat containing 1	-2.3648	0.0000
63170	ENSG00000218586		Rho GTPase activating protein 5 (ARHGAP5) pseudogene	-2.3645	0.0000
63169	ENSG00000264813		novel protein	-2.3645	0.0000
63168	ENSG00000185950	IRS2	insulin receptor substrate 2	-2.3644	0.0000
63167	ENSG00000251503	CENPS-CORT	CENPS-CORT readthrough	-2.3638	0.0000
63166	ENSG00000275532		novel transcript, antisense to MLLT6	-2.3636	0.0000
63165	ENSG00000206602	SNORD58A	small nucleolar RNA, C/D box 58A	-2.3636	0.0000
63164	ENSG00000235852		novel transcript	-2.3636	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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