Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773700

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773700


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M327Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 3.1699 0.0000
2 ENSG00000258536 FKBP1BP1 FKBP prolyl isomerase 1B pseudogene 1 3.1699 0.0000
3 ENSG00000275174 U6 spliceosomal RNA 3.0000 0.0000
4 ENSG00000249230 CDH12P2 cadherin 12 pseudogene 2 2.9288 0.0000
5 ENSG00000233646 OR52T1P olfactory receptor family 52 subfamily T member 1 pseudogene 2.8215 0.0000
6 ENSG00000230320 BEND7P1 BEN domain containing 7 pseudogene 1 2.8074 0.0000
7 ENSG00000237750 KCNH7-AS1 KCNH7 antisense RNA 1 2.8074 0.0000
8 ENSG00000252198 Y RNA 2.8074 0.0000
9 ENSG00000237539 novel pseudogene 2.7113 0.0000
10 ENSG00000200120 Y RNA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000138311 ZNF365 zinc finger protein 365 -2.3649 0.0000
63172 ENSG00000086619 ERO1B endoplasmic reticulum oxidoreductase 1 beta -2.3649 0.0000
63171 ENSG00000105447 GRWD1 glutamate rich WD repeat containing 1 -2.3648 0.0000
63170 ENSG00000218586 Rho GTPase activating protein 5 (ARHGAP5) pseudogene -2.3645 0.0000
63169 ENSG00000264813 novel protein -2.3645 0.0000
63168 ENSG00000185950 IRS2 insulin receptor substrate 2 -2.3644 0.0000
63167 ENSG00000251503 CENPS-CORT CENPS-CORT readthrough -2.3638 0.0000
63166 ENSG00000275532 novel transcript, antisense to MLLT6 -2.3636 0.0000
63165 ENSG00000206602 SNORD58A small nucleolar RNA, C/D box 58A -2.3636 0.0000
63164 ENSG00000235852 novel transcript -2.3636 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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