Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773700

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773700 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M327	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000236085	ACTG1P4	actin gamma 1 pseudogene 4	3.1699	0.0000
2	ENSG00000258536	FKBP1BP1	FKBP prolyl isomerase 1B pseudogene 1	3.1699	0.0000
3	ENSG00000275174		NA	3.0000	0.0000
4	ENSG00000249230	CDH12P2	cadherin 12 pseudogene 2	2.9288	0.0000
5	ENSG00000233646	OR52T1P	olfactory receptor family 52 subfamily T member 1 pseudogene	2.8215	0.0000
6	ENSG00000230320	BEND7P1	BEN domain containing 7 pseudogene 1	2.8074	0.0000
7	ENSG00000237750	KCNH7-AS1	KCNH7 antisense RNA 1	2.8074	0.0000
8	ENSG00000252198		NA	2.8074	0.0000
9	ENSG00000237539		novel pseudogene	2.7113	0.0000
10	ENSG00000200120		NA	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000267095		novel transcript	-2.3792	0.0000
63220	ENSG00000068120	COASY	Coenzyme A synthase	-2.3788	0.0000
63219	ENSG00000283888	MIR1469	microRNA 1469	-2.3788	0.0000
63218	ENSG00000175895	PLEKHF2	pleckstrin homology and FYVE domain containing 2	-2.3787	0.0000
63217	ENSG00000280022		TEC	-2.3783	0.0000
63216	ENSG00000227825	SLC9A7P1	solute carrier family 9 member 7 pseudogene 1	-2.3781	0.0000
63215	ENSG00000166347	CYB5A	cytochrome b5 type A	-2.3774	0.0000
63214	ENSG00000254028		novel transcript	-2.3771	0.0000
63213	ENSG00000284299		novel protein	-2.3766	0.0000
63212	ENSG00000249690		novel transcript, antisense to LRBA	-2.3764	0.1537

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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