SHOGoiN Cell Methylome: GSM2773700

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773700


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M327Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 3.1699 0.0000
2 ENSG00000258536 FKBP1BP1 FKBP prolyl isomerase 1B pseudogene 1 3.1699 0.0000
3 ENSG00000275174 NA 3.0000 0.0000
4 ENSG00000249230 CDH12P2 cadherin 12 pseudogene 2 2.9288 0.0000
5 ENSG00000233646 OR52T1P olfactory receptor family 52 subfamily T member 1 pseudogene 2.8215 0.0000
6 ENSG00000230320 BEND7P1 BEN domain containing 7 pseudogene 1 2.8074 0.0000
7 ENSG00000237750 novel transcript 2.8074 0.0000
8 ENSG00000252198 NA 2.8074 0.0000
9 ENSG00000237539 novel pseudogene 2.7113 0.0000
10 ENSG00000200120 NA 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000214019 RNA-binding region (RNP1, RRM) containing 2 (RNPC2) pseudogene -2.4194 0.0000
63340 ENSG00000134873 CLDN10 claudin 10 -2.4192 0.0000
63339 ENSG00000102977 ACD ACD shelterin complex subunit and telomerase recruitment factor -2.4191 0.0000
63338 ENSG00000272533 SNORA28 small nucleolar RNA, H/ACA box 28 -2.4190 0.0000
63337 ENSG00000270504 novel transcript, antisense to PXDC1 -2.4186 0.0000
63336 ENSG00000245552 novel transcript, antisense to SESN3 -2.4184 0.0000
63335 ENSG00000091482 SMPX small muscle protein X-linked -2.4183 0.0104
63334 ENSG00000205791 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 -2.4179 0.0000
63333 ENSG00000232621 C4BPAP2 C4BPA pseudogene 2 -2.4175 0.0000
63332 ENSG00000271989 novel transcript, antisense to APITD1-CORT -2.4173 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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