SHOGoiN Cell Methylome: GSM2773700
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773700 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M327 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000236085 | ACTG1P4 | actin gamma 1 pseudogene 4 | 3.1699 | 0.0000 |
| 2 | ENSG00000258536 | FKBP1BP1 | FKBP prolyl isomerase 1B pseudogene 1 | 3.1699 | 0.0000 |
| 3 | ENSG00000275174 | NA | 3.0000 | 0.0000 | |
| 4 | ENSG00000249230 | CDH12P2 | cadherin 12 pseudogene 2 | 2.9288 | 0.0000 |
| 5 | ENSG00000233646 | OR52T1P | olfactory receptor family 52 subfamily T member 1 pseudogene | 2.8215 | 0.0000 |
| 6 | ENSG00000230320 | BEND7P1 | BEN domain containing 7 pseudogene 1 | 2.8074 | 0.0000 |
| 7 | ENSG00000237750 | novel transcript | 2.8074 | 0.0000 | |
| 8 | ENSG00000252198 | NA | 2.8074 | 0.0000 | |
| 9 | ENSG00000237539 | novel pseudogene | 2.7113 | 0.0000 | |
| 10 | ENSG00000200120 | NA | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000214019 | RNA-binding region (RNP1, RRM) containing 2 (RNPC2) pseudogene | -2.4194 | 0.0000 | |
| 63340 | ENSG00000134873 | CLDN10 | claudin 10 | -2.4192 | 0.0000 |
| 63339 | ENSG00000102977 | ACD | ACD shelterin complex subunit and telomerase recruitment factor | -2.4191 | 0.0000 |
| 63338 | ENSG00000272533 | SNORA28 | small nucleolar RNA, H/ACA box 28 | -2.4190 | 0.0000 |
| 63337 | ENSG00000270504 | novel transcript, antisense to PXDC1 | -2.4186 | 0.0000 | |
| 63336 | ENSG00000245552 | novel transcript, antisense to SESN3 | -2.4184 | 0.0000 | |
| 63335 | ENSG00000091482 | SMPX | small muscle protein X-linked | -2.4183 | 0.0104 |
| 63334 | ENSG00000205791 | LOH12CR2 | loss of heterozygosity, 12, chromosomal region 2 | -2.4179 | 0.0000 |
| 63333 | ENSG00000232621 | C4BPAP2 | C4BPA pseudogene 2 | -2.4175 | 0.0000 |
| 63332 | ENSG00000271989 | novel transcript, antisense to APITD1-CORT | -2.4173 | 0.0000 |
