Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773701

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773701 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M328	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000126010	GRPR	gastrin releasing peptide receptor	3.5850	0.0000
2	ENSG00000249890		pseudogene similar to part of UDP glucuronosyltransferase 2 family protein	3.5850	0.0000
3	ENSG00000251685	UGT2B27P	UDP glucuronosyltransferase family 2 member B27, pseudogene	3.5850	0.0000
4	ENSG00000226081	USP12PX	USP12 pseudogene X-linked	3.4594	0.0000
5	ENSG00000225486		acid phosphatase 1, soluble (ACP1) pseudogene	3.3219	0.0000
6	ENSG00000227421	LINC01724	long intergenic non-protein coding RNA 1724	3.3219	0.0000
7	ENSG00000232446		pseudogene similar to melanoma antigen family B proteins	3.2024	0.0000
8	ENSG00000256756	TIMM17BP1	translocase of inner mitochondrial membrane 17B pseudogene 1	3.1699	0.0000
9	ENSG00000280013		heat shock transcription factor 2 binding protein (HSF2BP) pseudogene	3.1699	0.0000
63119	ENSG00000088538	DOCK3	dedicator of cytokinesis 3	-2.6808	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000253465	IGHVIV-44-1	immunoglobulin heavy variable (IV)-44-1 (pseudogene)	-2.6837	0.0000
63127	ENSG00000271397		lin-28 homolog A (C. elegans) (LIN28A) pseudogene	-2.6836	0.0000
63126	ENSG00000271899	MIR4466	microRNA 4466	-2.6835	0.0000
63125	ENSG00000270487		novel transcript, antisense to ARID1B	-2.6835	0.0000
63124	ENSG00000225136	PGBD4P5	piggyBac transposable element derived 4 pseudogene 5	-2.6835	0.7484
63123	ENSG00000168936	TMEM129	transmembrane protein 129, E3 ubiquitin ligase	-2.6821	0.0000
63122	ENSG00000278756	MIR6722	microRNA 6722	-2.6812	0.0000
63121	ENSG00000174145	NWD2	NACHT and WD repeat domain containing 2	-2.6809	0.0000
63120	ENSG00000236472		novel transcript, antisense to PPP1R9B	-2.6808	0.0000
63119	ENSG00000088538	DOCK3	dedicator of cytokinesis 3	-2.6808	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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