SHOGoiN Cell Methylome: GSM2773701
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773701 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M328 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000126010 | GRPR | gastrin releasing peptide receptor | 3.5850 | 0.0000 |
| 2 | ENSG00000249890 | pseudogene similar to part of UDP glucuronosyltransferase 2 family protein | 3.5850 | 0.0000 | |
| 3 | ENSG00000251685 | UGT2B27P | UDP glucuronosyltransferase family 2 member B27, pseudogene | 3.5850 | 0.0000 |
| 4 | ENSG00000226081 | USP12PX | ubiquitin specific peptidase 12 pseudogene X-linked | 3.4594 | 0.0000 |
| 5 | ENSG00000225486 | acid phosphatase 1, soluble (ACP1) pseudogene | 3.3219 | 0.0000 | |
| 6 | ENSG00000227421 | LINC01724 | long intergenic non-protein coding RNA 1724 | 3.3219 | 0.0000 |
| 7 | ENSG00000232446 | pseudogene similar to melanoma antigen family B proteins | 3.2024 | 0.0000 | |
| 8 | ENSG00000256756 | TIMM17BP1 | translocase of inner mitochondrial membrane 17B pseudogene 1 | 3.1699 | 0.0000 |
| 9 | ENSG00000280013 | heat shock transcription factor 2 binding protein (HSF2BP) pseudogene | 3.1699 | 0.0000 | |
| 63332 | ENSG00000271234 | novel transcript | -2.7492 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000170837 | GPR27 | G protein-coupled receptor 27 | -2.7537 | 0.0000 |
| 63340 | ENSG00000244158 | novel transcript | -2.7532 | 0.0000 | |
| 63339 | ENSG00000274798 | novel transcript | -2.7526 | 0.0000 | |
| 63338 | ENSG00000154429 | CCSAP | centriole, cilia and spindle associated protein | -2.7524 | 0.0000 |
| 63337 | ENSG00000185559 | DLK1 | delta like non-canonical Notch ligand 1 | -2.7514 | 0.0000 |
| 63336 | ENSG00000177606 | JUN | Jun proto-oncogene, AP-1 transcription factor subunit | -2.7513 | 0.0000 |
| 63335 | ENSG00000272902 | TBC1D8-AS1 | TBC1 domain family member 8 antisense RNA 1 | -2.7502 | 0.0000 |
| 63334 | ENSG00000279491 | TEC | -2.7498 | 0.0000 | |
| 63333 | ENSG00000161328 | LRRC56 | leucine rich repeat containing 56 | -2.7496 | 0.0000 |
| 63332 | ENSG00000271234 | novel transcript | -2.7492 | 0.0000 |
