Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773701

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773701


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M328Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000126010 GRPR gastrin releasing peptide receptor 3.5850 0.0000
2 ENSG00000249890 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 3.5850 0.0000
3 ENSG00000251685 UGT2B27P UDP glucuronosyltransferase family 2 member B27, pseudogene 3.5850 0.0000
4 ENSG00000226081 USP12PX USP12 pseudogene X-linked 3.4594 0.0000
5 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 3.3219 0.0000
6 ENSG00000227421 LINC01724 long intergenic non-protein coding RNA 1724 3.3219 0.0000
7 ENSG00000232446 pseudogene similar to melanoma antigen family B proteins 3.2024 0.0000
8 ENSG00000256756 TIMM17BP1 translocase of inner mitochondrial membrane 17B pseudogene 1 3.1699 0.0000
9 ENSG00000280013 heat shock transcription factor 2 binding protein (HSF2BP) pseudogene 3.1699 0.0000
63119 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -2.6808 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000253465 IGHVIV-44-1 immunoglobulin heavy variable (IV)-44-1 (pseudogene) -2.6837 0.0000
63127 ENSG00000271397 lin-28 homolog A (C. elegans) (LIN28A) pseudogene -2.6836 0.0000
63126 ENSG00000271899 MIR4466 microRNA 4466 -2.6835 0.0000
63125 ENSG00000270487 novel transcript, antisense to ARID1B -2.6835 0.0000
63124 ENSG00000225136 PGBD4P5 piggyBac transposable element derived 4 pseudogene 5 -2.6835 0.7484
63123 ENSG00000168936 TMEM129 transmembrane protein 129, E3 ubiquitin ligase -2.6821 0.0000
63122 ENSG00000278756 MIR6722 microRNA 6722 -2.6812 0.0000
63121 ENSG00000174145 NWD2 NACHT and WD repeat domain containing 2 -2.6809 0.0000
63120 ENSG00000236472 novel transcript, antisense to PPP1R9B -2.6808 0.0000
63119 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -2.6808 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...