Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773701
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773701
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M328
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000126010
GRPR
gastrin releasing peptide receptor
3.5850
0.0000
2
ENSG00000249890
pseudogene similar to part of UDP glucuronosyltransferase 2 family protein
3.5850
0.0000
3
ENSG00000251685
UGT2B27P
UDP glucuronosyltransferase family 2 member B27, pseudogene
3.5850
0.0000
4
ENSG00000226081
USP12PX
USP12 pseudogene X-linked
3.4594
0.0000
5
ENSG00000225486
acid phosphatase 1, soluble (ACP1) pseudogene
3.3219
0.0000
6
ENSG00000227421
LINC01724
long intergenic non-protein coding RNA 1724
3.3219
0.0000
7
ENSG00000232446
pseudogene similar to melanoma antigen family B proteins
3.2024
0.0000
8
ENSG00000256756
TIMM17BP1
translocase of inner mitochondrial membrane 17B pseudogene 1
3.1699
0.0000
9
ENSG00000280013
heat shock transcription factor 2 binding protein (HSF2BP) pseudogene
3.1699
0.0000
63119
ENSG00000088538
DOCK3
dedicator of cytokinesis 3
-2.6808
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000253465
IGHVIV-44-1
immunoglobulin heavy variable (IV)-44-1 (pseudogene)
-2.6837
0.0000
63127
ENSG00000271397
lin-28 homolog A (C. elegans) (LIN28A) pseudogene
-2.6836
0.0000
63126
ENSG00000271899
MIR4466
microRNA 4466
-2.6835
0.0000
63125
ENSG00000270487
novel transcript, antisense to ARID1B
-2.6835
0.0000
63124
ENSG00000225136
PGBD4P5
piggyBac transposable element derived 4 pseudogene 5
-2.6835
0.7484
63123
ENSG00000168936
TMEM129
transmembrane protein 129, E3 ubiquitin ligase
-2.6821
0.0000
63122
ENSG00000278756
MIR6722
microRNA 6722
-2.6812
0.0000
63121
ENSG00000174145
NWD2
NACHT and WD repeat domain containing 2
-2.6809
0.0000
63120
ENSG00000236472
novel transcript, antisense to PPP1R9B
-2.6808
0.0000
63119
ENSG00000088538
DOCK3
dedicator of cytokinesis 3
-2.6808
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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