SHOGoiN Cell Methylome: GSM2773701

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773701


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M328Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000126010 GRPR gastrin releasing peptide receptor 3.5850 0.0000
2 ENSG00000249890 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 3.5850 0.0000
3 ENSG00000251685 UGT2B27P UDP glucuronosyltransferase family 2 member B27, pseudogene 3.5850 0.0000
4 ENSG00000226081 USP12PX ubiquitin specific peptidase 12 pseudogene X-linked 3.4594 0.0000
5 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 3.3219 0.0000
6 ENSG00000227421 LINC01724 long intergenic non-protein coding RNA 1724 3.3219 0.0000
7 ENSG00000232446 pseudogene similar to melanoma antigen family B proteins 3.2024 0.0000
8 ENSG00000256756 TIMM17BP1 translocase of inner mitochondrial membrane 17B pseudogene 1 3.1699 0.0000
9 ENSG00000280013 heat shock transcription factor 2 binding protein (HSF2BP) pseudogene 3.1699 0.0000
63332 ENSG00000271234 novel transcript -2.7492 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000170837 GPR27 G protein-coupled receptor 27 -2.7537 0.0000
63340 ENSG00000244158 novel transcript -2.7532 0.0000
63339 ENSG00000274798 novel transcript -2.7526 0.0000
63338 ENSG00000154429 CCSAP centriole, cilia and spindle associated protein -2.7524 0.0000
63337 ENSG00000185559 DLK1 delta like non-canonical Notch ligand 1 -2.7514 0.0000
63336 ENSG00000177606 JUN Jun proto-oncogene, AP-1 transcription factor subunit -2.7513 0.0000
63335 ENSG00000272902 TBC1D8-AS1 TBC1 domain family member 8 antisense RNA 1 -2.7502 0.0000
63334 ENSG00000279491 TEC -2.7498 0.0000
63333 ENSG00000161328 LRRC56 leucine rich repeat containing 56 -2.7496 0.0000
63332 ENSG00000271234 novel transcript -2.7492 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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