Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773702

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773702


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M329Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242159 ABCF2P1 ATP binding cassette subfamily F member 2 pseudogene 1 3.5850 0.0000
2 ENSG00000225598 novel transcript 3.1699 0.0000
3 ENSG00000280108 novel transcript 3.1699 0.0000
4 ENSG00000235389 novel transcript 3.1133 0.0000
5 ENSG00000257199 RAN binding protein 1 (RANBP1) pseudogene 3.0242 0.0000
6 ENSG00000234108 cytochrome c oxidase subunit V1a polypeptide 1 (COX6A1) pseudogene 3.0000 0.0000
7 ENSG00000254195 TPM3P3 tropomyosin 3 pseudogene 3 3.0000 0.0000
8 ENSG00000275881 Metazoan signal recognition particle RNA 3.0000 0.0000
9 ENSG00000202485 RNU6-499P RNA, U6 small nuclear 499, pseudogene 2.9037 0.0000
10 ENSG00000217414 DDX18P3 DEAD-box helicase 18 pseudogene 3 2.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250562 RPL38P4 RPL38 pseudogene 4 -2.4895 0.0000
63127 ENSG00000113389 NPR3 natriuretic peptide receptor 3 -2.4892 0.0000
63126 ENSG00000164128 NPY1R neuropeptide Y receptor Y1 -2.4891 0.0000
63125 ENSG00000218089 DNAJA1P4 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 4 -2.4887 0.0000
63124 ENSG00000163935 SFMBT1 Scm like with four mbt domains 1 -2.4887 0.0000
63123 ENSG00000233875 novel transcript -2.4884 0.0000
63122 ENSG00000167476 JSRP1 junctional sarcoplasmic reticulum protein 1 -2.4883 0.0000
63121 ENSG00000079557 AFM afamin -2.4876 0.0000
63120 ENSG00000254531 uncharacterized LOC90024 -2.4875 0.0000
63119 ENSG00000265973 tripartite motif-containing pseudogene -2.4873 0.0252

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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