SHOGoiN Cell Methylome: GSM2773702

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773702


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M329Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242159 ABCF2P1 ATP binding cassette subfamily F member 2 pseudogene 1 3.5850 0.0000
2 ENSG00000225598 novel transcript 3.1699 0.0000
3 ENSG00000280108 novel transcript 3.1699 0.0000
4 ENSG00000235389 novel transcript 3.1133 0.0000
5 ENSG00000257199 RAN binding protein 1 (RANBP1) pseudogene 3.0242 0.0000
6 ENSG00000234108 cytochrome c oxidase subunit V1a polypeptide 1 (COX6A1) pseudogene 3.0000 0.0000
7 ENSG00000254195 TPM3P3 tropomyosin 3 pseudogene 3 3.0000 0.0000
8 ENSG00000275881 NA 3.0000 0.0000
9 ENSG00000202485 RNU6-499P RNA, U6 small nuclear 499, pseudogene 2.9037 0.0000
10 ENSG00000217414 DDX18P3 DEAD-box helicase 18 pseudogene 3 2.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000233642 GPR158-AS1 GPR158 antisense RNA 1 -2.5730 0.0000
63340 ENSG00000257093 KIAA1147 KIAA1147 -2.5729 0.0000
63339 ENSG00000134463 ECHDC3 enoyl-CoA hydratase domain containing 3 -2.5726 0.0000
63338 ENSG00000283694 MIR3202-2 microRNA 3202-2 -2.5724 0.0000
63337 ENSG00000241347 RN7SL466P RNA, 7SL, cytoplasmic 466, pseudogene -2.5724 0.0000
63336 ENSG00000278546 novel transcript -2.5701 0.0000
63335 ENSG00000274417 MIR6515 microRNA 6515 -2.5697 0.0000
63334 ENSG00000108654 DDX5 DEAD-box helicase 5 -2.5693 0.0000
63333 ENSG00000100314 CABP7 calcium binding protein 7 -2.5686 0.0000
63332 ENSG00000268996 MAN1B1-DT MAN1B1 divergent transcript -2.5682 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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