Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773703

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773703


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M330Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000184227 ACOT1 acyl-CoA thioesterase 1 3.1073 0.0000
2 ENSG00000249562 FERM domain containing 7 (FRMD7) pseudogene 2.5850 0.0000
3 ENSG00000224185 SNX18P9 sorting nexin 18 pseudogene 9 2.3999 0.0000
4 ENSG00000131808 FSHB follicle stimulating hormone subunit beta 2.3219 0.0000
5 ENSG00000223800 novel transcript 2.3219 0.0001
6 ENSG00000224827 LINC00265-2P long intergenic non-protein coding RNA 265-2, pseudogene 2.3219 0.0000
7 ENSG00000231255 novel transcript 2.3219 0.0001
8 ENSG00000252023 RNU6-581P RNA, U6 small nuclear 581, pseudogene 2.3219 0.0001
9 ENSG00000275071 NA 2.3219 0.0001
10 ENSG00000207632 MIR588 microRNA 588 2.0000 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000284574 MIR6787 microRNA 6787 -1.9502 0.0000
63127 ENSG00000266446 novel transcript, sense intronic CDKN2B-AS1 -1.9497 0.0000
63126 ENSG00000102172 SMS spermine synthase -1.9493 0.0000
63125 ENSG00000181619 GPR135 G protein-coupled receptor 135 -1.9491 0.0000
63124 ENSG00000228343 novel transcript -1.9489 0.0000
63123 ENSG00000227034 ribosomal protein L5 (RPL5) pseudogene -1.9484 0.0000
63122 ENSG00000129951 PLPPR3 phospholipid phosphatase related 3 -1.9480 0.0000
63121 ENSG00000255341 OR8Q1P olfactory receptor family 8 subfamily Q member 1 pseudogene -1.9472 0.0090
63120 ENSG00000254647 INS insulin -1.9469 0.0000
63119 ENSG00000254158 F-box and WD repeat domain containing 2 (FBXW2) pseudogene -1.9468 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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