SHOGoiN Cell Methylome: GSM2773704

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773704


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M331Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222715 MIR1911 microRNA 1911 2.3219 0.0011
2 ENSG00000248254 novel transcript 2.3089 0.0000
3 ENSG00000243951 RN7SL308P RNA, 7SL, cytoplasmic 308, pseudogene 2.0499 0.0000
4 ENSG00000200385 NA 2.0000 0.0000
5 ENSG00000226153 calcium binding protein P22 (CHP) pseudogene 2.0000 0.0000
6 ENSG00000226362 FAM41AY2 family with sequence similarity 41 member A, Y-linked 2 2.0000 0.0000
7 ENSG00000228999 long intergenic non-protein coding RNA 1830 2.0000 0.0060
8 ENSG00000236187 GJA6P gap junction protein alpha 6, pseudogene 2.0000 0.0060
9 ENSG00000242339 LINC02025 long intergenic non-protein coding RNA 2025 2.0000 0.0000
10 ENSG00000244099 RPS23P3 ribosomal protein S23 pseudogene 3 2.0000 0.0060

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000251664 PCDHA12 protocadherin alpha 12 -1.9952 0.0000
63340 ENSG00000165025 SYK spleen associated tyrosine kinase -1.9948 0.0000
63339 ENSG00000199492 RNU6-1313P RNA, U6 small nuclear 1313, pseudogene -1.9946 0.0000
63338 ENSG00000272434 novel transcript, antisense to IMPDH2 and QRICH1 -1.9945 0.0000
63337 ENSG00000279845 TEC -1.9936 0.0000
63336 ENSG00000159387 IRX6 iroquois homeobox 6 -1.9935 0.0000
63335 ENSG00000272230 MIR3666 microRNA 3666 -1.9932 0.0952
63334 ENSG00000253485 PCDHGA5 protocadherin gamma subfamily A, 5 -1.9917 0.0000
63333 ENSG00000241926 MTCO1P55 MT-CO1 pseudogene 55 -1.9914 0.1441
63332 ENSG00000188938 FAM120AOS family with sequence similarity 120A opposite strand -1.9914 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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