Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773704

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773704


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M331Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222715 MIR1911 microRNA 1911 2.3219 0.0011
2 ENSG00000248254 novel transcript 2.3089 0.0000
3 ENSG00000243951 RN7SL308P RNA, 7SL, cytoplasmic 308, pseudogene 2.0499 0.0000
4 ENSG00000200385 NA 2.0000 0.0000
5 ENSG00000226153 CHP1P3 CHP1 pseudogene 3 2.0000 0.0000
6 ENSG00000226362 FAM41AY2 family with sequence similarity 41 member A, Y-linked 2 2.0000 0.0000
7 ENSG00000228999 long intergenic non-protein coding RNA 1830 2.0000 0.0060
8 ENSG00000236187 GJA6P gap junction protein alpha 6, pseudogene 2.0000 0.0060
9 ENSG00000242339 LINC02025 long intergenic non-protein coding RNA 2025 2.0000 0.0000
10 ENSG00000244099 RPS23P3 ribosomal protein S23 pseudogene 3 2.0000 0.0060

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000259615 novel transcript, antisense to TICRR -1.9203 0.0000
63127 ENSG00000245552 novel transcript, antisense to SESN3 -1.9202 0.0000
63126 ENSG00000141668 CBLN2 cerebellin 2 precursor -1.9200 0.0000
63125 ENSG00000231254 PCED1CP PC-esterase domain containing 1C, pseudogene -1.9197 0.0000
63124 ENSG00000273015 novel transcript -1.9196 0.0000
63123 ENSG00000252714 RNA5SP392 RNA, 5S ribosomal pseudogene 392 -1.9188 0.0000
63122 ENSG00000241679 novel transcript -1.9182 0.0000
63121 ENSG00000246820 RIC3-DT RIC3 divergent transcript -1.9181 0.0000
63120 ENSG00000260428 SCX scleraxis bHLH transcription factor -1.9174 0.0000
63119 ENSG00000200713 RNU6-682P RNA, U6 small nuclear 682, pseudogene -1.9171 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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