Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773705

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773705


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M332Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254138 novel transcript 2.8074 0.0000
2 ENSG00000182348 ZNF804B zinc finger protein 804B 2.5850 0.0001
3 ENSG00000257752 transmembrane protein 38A (TMEM38A) 2.5850 0.0001
4 ENSG00000258767 GRAM domain containing 4 (GRAMD4) pseudogene 2.5850 0.0001
5 ENSG00000258848 GRAMD4P6 GRAM domain containing 4 pseudogene 6 2.5850 0.0001
6 ENSG00000279264 tec 2.5850 0.0000
7 ENSG00000182334 OR5P3 olfactory receptor family 5 subfamily P member 3 2.3219 0.0006
8 ENSG00000196085 SMIM7P1 SMIM7 pseudogene 1 2.3219 0.0006
9 ENSG00000198934 MAGEE1 MAGE family member E1 2.3219 0.0006
10 ENSG00000224374 novel transcript 2.3219 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000164897 TMUB1 transmembrane and ubiquitin like domain containing 1 -1.7122 0.0000
63127 ENSG00000274060 MIR6724-2 microRNA 6724-2 -1.7122 0.0000
63126 ENSG00000146676 PURB purine rich element binding protein B -1.7122 0.0000
63125 ENSG00000137460 FHDC1 FH2 domain containing 1 -1.7108 0.0000
63124 ENSG00000148156 ACTL7B actin like 7B -1.7103 0.0000
63123 ENSG00000263838 MIR4698 microRNA 4698 -1.7095 0.0390
63122 ENSG00000262352 LINC02564 long intergenic non-protein coding RNA 2564 -1.7093 0.0000
63121 ENSG00000238785 RNU7-92P RNA, U7 small nuclear 92 pseudogene -1.7091 0.0001
63120 ENSG00000252068 RNU6-390P RNA, U6 small nuclear 390, pseudogene -1.7088 0.0000
63119 ENSG00000162086 ZNF75A zinc finger protein 75a -1.7085 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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