SHOGoiN Cell Methylome: GSM2773705

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773705


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M332Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254138 novel transcript 2.8074 0.0000
2 ENSG00000182348 ZNF804B zinc finger protein 804B 2.5850 0.0001
3 ENSG00000257752 transmembrane protein 38A (TMEM38A) 2.5850 0.0001
4 ENSG00000258767 GRAM domain containing 4 (GRAMD4) pseudogene 2.5850 0.0001
5 ENSG00000258848 GRAMD4P6 GRAM domain containing 4 pseudogene 6 2.5850 0.0001
6 ENSG00000279264 tec 2.5850 0.0000
7 ENSG00000182334 OR5P3 olfactory receptor family 5 subfamily P member 3 2.3219 0.0006
8 ENSG00000196085 chromosome 19 open reading frame 42 (C19orf42) pseudogene 2.3219 0.0006
9 ENSG00000198934 MAGEE1 MAGE family member E1 2.3219 0.0006
10 ENSG00000224374 novel transcript 2.3219 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000258130 coiled-coil domain containing 101 (CCDC101) pseudogene -1.7775 0.0000
63340 ENSG00000259415 novel transcript -1.7754 0.0000
63339 ENSG00000163053 SLC16A14 solute carrier family 16 member 14 -1.7753 0.0000
63338 ENSG00000228661 novel transcript -1.7752 0.0000
63337 ENSG00000259685 IDH2-DT IDH2 divergent transcript -1.7752 0.0000
63336 ENSG00000179588 ZFPM1 zinc finger protein, FOG family member 1 -1.7750 0.0000
63335 ENSG00000269466 histone cluster 2, H3c pseudogene -1.7744 0.0053
63334 ENSG00000277553 NA -1.7741 0.0000
63333 ENSG00000179163 FUCA1 alpha-L-fucosidase 1 -1.7740 0.0000
63332 ENSG00000276098 aurora kinase A interacting protein 1 (AURKAIP1) pseudogene -1.7740 0.6174

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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