Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773706

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773706


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M333Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000172399 MYOZ2 myozenin 2 2.3219 0.0004
2 ENSG00000228587 novel transcript 2.3219 0.0000
3 ENSG00000187258 NPSR1 neuropeptide S receptor 1 2.0000 0.0000
4 ENSG00000206962 RNU6-74P RNA, U6 small nuclear 74, pseudogene 2.0000 0.0030
5 ENSG00000213793 ZNF888 zinc finger protein 888 2.0000 0.0000
6 ENSG00000224365 vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene 2.0000 0.0000
7 ENSG00000225272 ribosomal protein L21 (RPL21) pseudogene 2.0000 0.0030
8 ENSG00000228501 RPL15P18 ribosomal protein L15 pseudogene 18 2.0000 0.0030
9 ENSG00000232360 novel transcript 2.0000 0.0030
10 ENSG00000240254 B4GALT4-AS1 B4GALT4 antisense RNA 1 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000131355 ADGRE3 adhesion G protein-coupled receptor E3 -1.5850 0.6120
63127 ENSG00000124003 MOGAT1 monoacylglycerol O-acyltransferase 1 -1.5850 1.0000
63126 ENSG00000122406 RPL5 ribosomal protein L5 -1.5850 0.0114
63125 ENSG00000121989 ACVR2A activin A receptor type 2A -1.5850 1.0000
63124 ENSG00000119973 PRLHR prolactin releasing hormone receptor -1.5850 0.0107
63123 ENSG00000115761 NOL10 nucleolar protein 10 -1.5850 0.0114
63122 ENSG00000113595 TRIM23 tripartite motif containing 23 -1.5850 1.0000
63121 ENSG00000109851 DBX1 developing brain homeobox 1 -1.5850 0.3757
63120 ENSG00000105146 AURKC aurora kinase C -1.5850 0.6120
63119 ENSG00000104371 DKK4 dickkopf WNT signaling pathway inhibitor 4 -1.5850 0.3757

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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