SHOGoiN Cell Methylome: GSM2773706
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773706 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M333 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000172399 | MYOZ2 | myozenin 2 | 2.3219 | 0.0004 |
| 2 | ENSG00000228587 | novel transcript | 2.3219 | 0.0000 | |
| 3 | ENSG00000187258 | NPSR1 | neuropeptide S receptor 1 | 2.0000 | 0.0000 |
| 4 | ENSG00000206962 | RNU6-74P | RNA, U6 small nuclear 74, pseudogene | 2.0000 | 0.0030 |
| 5 | ENSG00000213793 | ZNF888 | zinc finger protein 888 | 2.0000 | 0.0000 |
| 6 | ENSG00000224365 | vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene | 2.0000 | 0.0000 | |
| 7 | ENSG00000225272 | ribosomal protein L21 (RPL21) pseudogene | 2.0000 | 0.0030 | |
| 8 | ENSG00000228501 | RPL15P18 | ribosomal protein L15 pseudogene 18 | 2.0000 | 0.0030 |
| 9 | ENSG00000232360 | novel transcript | 2.0000 | 0.0030 | |
| 10 | ENSG00000240254 | B4GALT4-AS1 | B4GALT4 antisense RNA 1 | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000226695 | ANKRD20A10P | ankyrin repeat domain 20 family member A10, pseudogene | -1.5850 | 0.0432 |
| 63340 | ENSG00000226532 | pseudogene similar to part of ribosomal protein, large, P1 (RPLP1) | -1.5850 | 1.0000 | |
| 63339 | ENSG00000226395 | MRPS21P5 | mitochondrial ribosomal protein S21 pseudogene 5 | -1.5850 | 0.6120 |
| 63338 | ENSG00000226345 | zinc finger, DHHC-type containing 1 (ZDHHC1) pseudogene | -1.5850 | 0.6120 | |
| 63337 | ENSG00000226286 | novel transcript | -1.5850 | 0.0629 | |
| 63336 | ENSG00000225990 | SNRPEP7 | small nuclear ribonucleoprotein polypeptide E pseudogene 7 | -1.5850 | 0.2364 |
| 63335 | ENSG00000225949 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 (DDX53) pseudogene | -1.5850 | 1.0000 | |
| 63334 | ENSG00000225877 | PSG8-AS1 | PSG8 antisense RNA 1 | -1.5850 | 1.0000 |
| 63333 | ENSG00000225676 | novel transcript | -1.5850 | 1.0000 | |
| 63332 | ENSG00000225537 | novel transcript | -1.5850 | 1.0000 |
