SHOGoiN Cell Methylome: GSM2773706

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773706


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M333Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000172399 MYOZ2 myozenin 2 2.3219 0.0004
2 ENSG00000228587 novel transcript 2.3219 0.0000
3 ENSG00000187258 NPSR1 neuropeptide S receptor 1 2.0000 0.0000
4 ENSG00000206962 RNU6-74P RNA, U6 small nuclear 74, pseudogene 2.0000 0.0030
5 ENSG00000213793 ZNF888 zinc finger protein 888 2.0000 0.0000
6 ENSG00000224365 vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene 2.0000 0.0000
7 ENSG00000225272 ribosomal protein L21 (RPL21) pseudogene 2.0000 0.0030
8 ENSG00000228501 RPL15P18 ribosomal protein L15 pseudogene 18 2.0000 0.0030
9 ENSG00000232360 novel transcript 2.0000 0.0030
10 ENSG00000240254 B4GALT4-AS1 B4GALT4 antisense RNA 1 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000226695 ANKRD20A10P ankyrin repeat domain 20 family member A10, pseudogene -1.5850 0.0432
63340 ENSG00000226532 pseudogene similar to part of ribosomal protein, large, P1 (RPLP1) -1.5850 1.0000
63339 ENSG00000226395 MRPS21P5 mitochondrial ribosomal protein S21 pseudogene 5 -1.5850 0.6120
63338 ENSG00000226345 zinc finger, DHHC-type containing 1 (ZDHHC1) pseudogene -1.5850 0.6120
63337 ENSG00000226286 novel transcript -1.5850 0.0629
63336 ENSG00000225990 SNRPEP7 small nuclear ribonucleoprotein polypeptide E pseudogene 7 -1.5850 0.2364
63335 ENSG00000225949 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 (DDX53) pseudogene -1.5850 1.0000
63334 ENSG00000225877 PSG8-AS1 PSG8 antisense RNA 1 -1.5850 1.0000
63333 ENSG00000225676 novel transcript -1.5850 1.0000
63332 ENSG00000225537 novel transcript -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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