Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773706
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773706
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M333
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000172399
MYOZ2
myozenin 2
2.3219
0.0004
2
ENSG00000228587
novel transcript
2.3219
0.0000
3
ENSG00000187258
NPSR1
neuropeptide S receptor 1
2.0000
0.0000
4
ENSG00000206962
RNU6-74P
RNA, U6 small nuclear 74, pseudogene
2.0000
0.0030
5
ENSG00000213793
ZNF888
zinc finger protein 888
2.0000
0.0000
6
ENSG00000224365
vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene
2.0000
0.0000
7
ENSG00000225272
ribosomal protein L21 (RPL21) pseudogene
2.0000
0.0030
8
ENSG00000228501
RPL15P18
ribosomal protein L15 pseudogene 18
2.0000
0.0030
9
ENSG00000232360
novel transcript
2.0000
0.0030
10
ENSG00000240254
B4GALT4-AS1
B4GALT4 antisense RNA 1
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000131355
ADGRE3
adhesion G protein-coupled receptor E3
-1.5850
0.6120
63127
ENSG00000124003
MOGAT1
monoacylglycerol O-acyltransferase 1
-1.5850
1.0000
63126
ENSG00000122406
RPL5
ribosomal protein L5
-1.5850
0.0114
63125
ENSG00000121989
ACVR2A
activin A receptor type 2A
-1.5850
1.0000
63124
ENSG00000119973
PRLHR
prolactin releasing hormone receptor
-1.5850
0.0107
63123
ENSG00000115761
NOL10
nucleolar protein 10
-1.5850
0.0114
63122
ENSG00000113595
TRIM23
tripartite motif containing 23
-1.5850
1.0000
63121
ENSG00000109851
DBX1
developing brain homeobox 1
-1.5850
0.3757
63120
ENSG00000105146
AURKC
aurora kinase C
-1.5850
0.6120
63119
ENSG00000104371
DKK4
dickkopf WNT signaling pathway inhibitor 4
-1.5850
0.3757
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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