Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773707

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773707


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M334Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223970 pseudogene similar to part of ribosome binding protein 1 homolog 180kDa (dog) RRBP1 2.8074 0.0000
2 ENSG00000251614 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 2.8074 0.0000
3 ENSG00000233605 LINC01851 long intergenic non-protein coding RNA 1851 2.5850 0.0000
4 ENSG00000239793 ribosomal protein S21 (RPS21) pseudogene 2.5382 0.0000
5 ENSG00000109471 IL2 interleukin 2 2.3219 0.0001
6 ENSG00000200028 RNA5SP98 RNA, 5S ribosomal pseudogene 98 2.3219 0.0000
7 ENSG00000220581 VN1R12P vomeronasal 1 receptor 12, pseudogene 2.3219 0.0000
8 ENSG00000226939 novel transcript 2.3219 0.0001
9 ENSG00000229919 ELOCP3 elongin C pseudogene 3 2.3219 0.0001
10 ENSG00000276514 NA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000272121 novel transcript -2.1177 0.0000
63127 ENSG00000124181 PLCG1 phospholipase C gamma 1 -2.1174 0.0000
63126 ENSG00000261793 novel transcript, TMEM210 and LRRC26 readthrough -2.1172 0.0000
63125 ENSG00000174373 RALGAPA1 Ral GTPase activating protein catalytic subunit alpha 1 -2.1164 0.0000
63124 ENSG00000119973 PRLHR prolactin releasing hormone receptor -2.1162 0.0000
63123 ENSG00000206920 RNY1P6 RNY1 pseudogene 6 -2.1157 0.0000
63122 ENSG00000272525 BTF3-DT BTF3 divergent transcript -2.1150 0.0194
63121 ENSG00000243207 PPAN-P2RY11 PPAN-P2RY11 readthrough -2.1148 0.0000
63120 ENSG00000102302 FGD1 FYVE, RhoGEF and PH domain containing 1 -2.1147 0.0000
63119 ENSG00000271659 novel transcript, antisense to PTCH1 -2.1147 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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