SHOGoiN Cell Methylome: GSM2773707

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773707


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M334Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223970 pseudogene similar to part of ribosome binding protein 1 homolog 180kDa (dog) RRBP1 2.8074 0.0000
2 ENSG00000251614 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 2.8074 0.0000
3 ENSG00000233605 LINC01851 long intergenic non-protein coding RNA 1851 2.5850 0.0000
4 ENSG00000239793 ribosomal protein S21 (RPS21) pseudogene 2.5382 0.0000
5 ENSG00000109471 IL2 interleukin 2 2.3219 0.0001
6 ENSG00000200028 RNA5SP98 RNA, 5S ribosomal pseudogene 98 2.3219 0.0000
7 ENSG00000220581 VN1R12P vomeronasal 1 receptor 12, pseudogene 2.3219 0.0000
8 ENSG00000226939 novel transcript 2.3219 0.0001
9 ENSG00000229919 ELOCP3 elongin C pseudogene 3 2.3219 0.0001
10 ENSG00000276514 NA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000125843 AP5S1 adaptor related protein complex 5 subunit sigma 1 -2.1867 0.0000
63340 ENSG00000255301 novel transcript -2.1864 0.0000
63339 ENSG00000140939 nucleolar protein 3 -2.1851 0.0000
63338 ENSG00000259985 novel transcript, antisense to B4GALT6 -2.1848 0.0000
63337 ENSG00000258068 novel transcript, sense intronic to PRICKLE1 -2.1826 0.0000
63336 ENSG00000198526 PABPC1P2 poly(A) binding protein cytoplasmic 1 pseudogene 2 -2.1820 0.0053
63335 ENSG00000116985 BMP8B bone morphogenetic protein 8b -2.1812 0.0000
63334 ENSG00000269609 RPARP-AS1 RPARP antisense RNA 1 -2.1811 0.0000
63333 ENSG00000278851 MIR6879 microRNA 6879 -2.1805 0.0000
63332 ENSG00000057704 TMCC3 transmembrane and coiled-coil domain family 3 -2.1802 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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