Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773707

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773707 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M334	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000223970		pseudogene similar to part of ribosome binding protein 1 homolog 180kDa (dog) RRBP1	2.8074	0.0000
2	ENSG00000251614	HSPA8P19	heat shock protein family A (Hsp70) member pseudogene 19	2.8074	0.0000
3	ENSG00000233605	LINC01851	long intergenic non-protein coding RNA 1851	2.5850	0.0000
4	ENSG00000239793		ribosomal protein S21 (RPS21) pseudogene	2.5382	0.0000
5	ENSG00000109471	IL2	interleukin 2	2.3219	0.0001
6	ENSG00000200028	RNA5SP98	RNA, 5S ribosomal pseudogene 98	2.3219	0.0000
7	ENSG00000220581	VN1R12P	vomeronasal 1 receptor 12, pseudogene	2.3219	0.0000
8	ENSG00000226939		novel transcript	2.3219	0.0001
9	ENSG00000229919	ELOCP3	elongin C pseudogene 3	2.3219	0.0001
10	ENSG00000276514		NA	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000272121		novel transcript	-2.1177	0.0000
63127	ENSG00000124181	PLCG1	phospholipase C gamma 1	-2.1174	0.0000
63126	ENSG00000261793		novel transcript, TMEM210 and LRRC26 readthrough	-2.1172	0.0000
63125	ENSG00000174373	RALGAPA1	Ral GTPase activating protein catalytic subunit alpha 1	-2.1164	0.0000
63124	ENSG00000119973	PRLHR	prolactin releasing hormone receptor	-2.1162	0.0000
63123	ENSG00000206920	RNY1P6	RNY1 pseudogene 6	-2.1157	0.0000
63122	ENSG00000272525	BTF3-DT	BTF3 divergent transcript	-2.1150	0.0194
63121	ENSG00000243207	PPAN-P2RY11	PPAN-P2RY11 readthrough	-2.1148	0.0000
63120	ENSG00000102302	FGD1	FYVE, RhoGEF and PH domain containing 1	-2.1147	0.0000
63119	ENSG00000271659		novel transcript, antisense to PTCH1	-2.1147	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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