Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773707
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773707
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M334
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000223970
pseudogene similar to part of ribosome binding protein 1 homolog 180kDa (dog) RRBP1
2.8074
0.0000
2
ENSG00000251614
HSPA8P19
heat shock protein family A (Hsp70) member pseudogene 19
2.8074
0.0000
3
ENSG00000233605
LINC01851
long intergenic non-protein coding RNA 1851
2.5850
0.0000
4
ENSG00000239793
ribosomal protein S21 (RPS21) pseudogene
2.5382
0.0000
5
ENSG00000109471
IL2
interleukin 2
2.3219
0.0001
6
ENSG00000200028
RNA5SP98
RNA, 5S ribosomal pseudogene 98
2.3219
0.0000
7
ENSG00000220581
VN1R12P
vomeronasal 1 receptor 12, pseudogene
2.3219
0.0000
8
ENSG00000226939
novel transcript
2.3219
0.0001
9
ENSG00000229919
ELOCP3
elongin C pseudogene 3
2.3219
0.0001
10
ENSG00000276514
NA
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000272121
novel transcript
-2.1177
0.0000
63127
ENSG00000124181
PLCG1
phospholipase C gamma 1
-2.1174
0.0000
63126
ENSG00000261793
novel transcript, TMEM210 and LRRC26 readthrough
-2.1172
0.0000
63125
ENSG00000174373
RALGAPA1
Ral GTPase activating protein catalytic subunit alpha 1
-2.1164
0.0000
63124
ENSG00000119973
PRLHR
prolactin releasing hormone receptor
-2.1162
0.0000
63123
ENSG00000206920
RNY1P6
RNY1 pseudogene 6
-2.1157
0.0000
63122
ENSG00000272525
BTF3-DT
BTF3 divergent transcript
-2.1150
0.0194
63121
ENSG00000243207
PPAN-P2RY11
PPAN-P2RY11 readthrough
-2.1148
0.0000
63120
ENSG00000102302
FGD1
FYVE, RhoGEF and PH domain containing 1
-2.1147
0.0000
63119
ENSG00000271659
novel transcript, antisense to PTCH1
-2.1147
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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