SHOGoiN Cell Methylome: GSM2773707
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773707 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M334 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000223970 | pseudogene similar to part of ribosome binding protein 1 homolog 180kDa (dog) RRBP1 | 2.8074 | 0.0000 | |
| 2 | ENSG00000251614 | HSPA8P19 | heat shock protein family A (Hsp70) member pseudogene 19 | 2.8074 | 0.0000 |
| 3 | ENSG00000233605 | LINC01851 | long intergenic non-protein coding RNA 1851 | 2.5850 | 0.0000 |
| 4 | ENSG00000239793 | ribosomal protein S21 (RPS21) pseudogene | 2.5382 | 0.0000 | |
| 5 | ENSG00000109471 | IL2 | interleukin 2 | 2.3219 | 0.0001 |
| 6 | ENSG00000200028 | RNA5SP98 | RNA, 5S ribosomal pseudogene 98 | 2.3219 | 0.0000 |
| 7 | ENSG00000220581 | VN1R12P | vomeronasal 1 receptor 12, pseudogene | 2.3219 | 0.0000 |
| 8 | ENSG00000226939 | novel transcript | 2.3219 | 0.0001 | |
| 9 | ENSG00000229919 | ELOCP3 | elongin C pseudogene 3 | 2.3219 | 0.0001 |
| 10 | ENSG00000276514 | NA | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000125843 | AP5S1 | adaptor related protein complex 5 subunit sigma 1 | -2.1867 | 0.0000 |
| 63340 | ENSG00000255301 | novel transcript | -2.1864 | 0.0000 | |
| 63339 | ENSG00000140939 | nucleolar protein 3 | -2.1851 | 0.0000 | |
| 63338 | ENSG00000259985 | novel transcript, antisense to B4GALT6 | -2.1848 | 0.0000 | |
| 63337 | ENSG00000258068 | novel transcript, sense intronic to PRICKLE1 | -2.1826 | 0.0000 | |
| 63336 | ENSG00000198526 | PABPC1P2 | poly(A) binding protein cytoplasmic 1 pseudogene 2 | -2.1820 | 0.0053 |
| 63335 | ENSG00000116985 | BMP8B | bone morphogenetic protein 8b | -2.1812 | 0.0000 |
| 63334 | ENSG00000269609 | RPARP-AS1 | RPARP antisense RNA 1 | -2.1811 | 0.0000 |
| 63333 | ENSG00000278851 | MIR6879 | microRNA 6879 | -2.1805 | 0.0000 |
| 63332 | ENSG00000057704 | TMCC3 | transmembrane and coiled-coil domain family 3 | -2.1802 | 0.0000 |
