SHOGoiN Cell Methylome: GSM2773708

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773708


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M335Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207299 NA 2.8074 0.0000
2 ENSG00000230551 novel transcript 2.8074 0.0000
3 ENSG00000234173 novel transcript, antisense to PCDH15 2.8074 0.0000
4 ENSG00000258387 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.8074 0.0000
5 ENSG00000270857 ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene 2.8074 0.0000
6 ENSG00000223460 GAPDHP69 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 2.6304 0.0000
7 ENSG00000225406 pseudogene similar to part of E74-like factor 2 (ets domain transcription factor) (ELF2) 2.5850 0.0000
8 ENSG00000241815 retinoblastoma binding protein 4 (RBBP4) pseudogene 2.5850 0.0001
9 ENSG00000267039 novel transcript, antisense to KIAA1328 2.3900 0.0000
10 ENSG00000256193 LINC00507 long intergenic non-protein coding RNA 507 2.3380 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000204962 PCDHA8 protocadherin alpha 8 -2.2112 0.0000
63340 ENSG00000253293 HOXA10 homeobox A10 -2.2105 0.0000
63339 ENSG00000261583 novel transcript -2.2095 0.0000
63338 ENSG00000280026 novel transcript, antisense to PCDHGB1 -2.2094 0.0000
63337 ENSG00000136826 KLF4 Kruppel like factor 4 -2.2091 0.0000
63336 ENSG00000164631 ZNF12 zinc finger protein 12 -2.2085 0.0000
63335 ENSG00000270413 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene -2.2072 0.0017
63334 ENSG00000118680 MYL12B myosin light chain 12B -2.2070 0.0000
63333 ENSG00000162639 HENMT1 HEN methyltransferase 1 -2.2051 0.0000
63332 ENSG00000184515 BEX5 brain expressed X-linked 5 -2.2050 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...