SHOGoiN Cell Methylome: GSM2773708
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773708 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M335 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000207299 | NA | 2.8074 | 0.0000 | |
| 2 | ENSG00000230551 | novel transcript | 2.8074 | 0.0000 | |
| 3 | ENSG00000234173 | novel transcript, antisense to PCDH15 | 2.8074 | 0.0000 | |
| 4 | ENSG00000258387 | Rho GTPase activating protein 17 (ARHGAP17) pseudogene | 2.8074 | 0.0000 | |
| 5 | ENSG00000270857 | ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene | 2.8074 | 0.0000 | |
| 6 | ENSG00000223460 | GAPDHP69 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 | 2.6304 | 0.0000 |
| 7 | ENSG00000225406 | pseudogene similar to part of E74-like factor 2 (ets domain transcription factor) (ELF2) | 2.5850 | 0.0000 | |
| 8 | ENSG00000241815 | retinoblastoma binding protein 4 (RBBP4) pseudogene | 2.5850 | 0.0001 | |
| 9 | ENSG00000267039 | novel transcript, antisense to KIAA1328 | 2.3900 | 0.0000 | |
| 10 | ENSG00000256193 | LINC00507 | long intergenic non-protein coding RNA 507 | 2.3380 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000204962 | PCDHA8 | protocadherin alpha 8 | -2.2112 | 0.0000 |
| 63340 | ENSG00000253293 | HOXA10 | homeobox A10 | -2.2105 | 0.0000 |
| 63339 | ENSG00000261583 | novel transcript | -2.2095 | 0.0000 | |
| 63338 | ENSG00000280026 | novel transcript, antisense to PCDHGB1 | -2.2094 | 0.0000 | |
| 63337 | ENSG00000136826 | KLF4 | Kruppel like factor 4 | -2.2091 | 0.0000 |
| 63336 | ENSG00000164631 | ZNF12 | zinc finger protein 12 | -2.2085 | 0.0000 |
| 63335 | ENSG00000270413 | eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene | -2.2072 | 0.0017 | |
| 63334 | ENSG00000118680 | MYL12B | myosin light chain 12B | -2.2070 | 0.0000 |
| 63333 | ENSG00000162639 | HENMT1 | HEN methyltransferase 1 | -2.2051 | 0.0000 |
| 63332 | ENSG00000184515 | BEX5 | brain expressed X-linked 5 | -2.2050 | 0.0000 |
