Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773708

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773708


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M335Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207299 NA 2.8074 0.0000
2 ENSG00000230551 novel transcript 2.8074 0.0000
3 ENSG00000234173 novel transcript, antisense to PCDH15 2.8074 0.0000
4 ENSG00000258387 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.8074 0.0000
5 ENSG00000270857 ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene 2.8074 0.0000
6 ENSG00000223460 GAPDHP69 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 2.6304 0.0000
7 ENSG00000225406 ELF2P4 ELF2 pseudogene 4 2.5850 0.0000
8 ENSG00000241815 retinoblastoma binding protein 4 (RBBP4) pseudogene 2.5850 0.0001
9 ENSG00000267039 novel transcript, antisense to KIAA1328 2.3900 0.0000
10 ENSG00000256193 LINC00507 long intergenic non-protein coding RNA 507 2.3380 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000231992 novel transcript -2.1388 0.0000
63127 ENSG00000178199 ZC3H12D zinc finger CCCH-type containing 12D -2.1387 0.0000
63126 ENSG00000172733 PURG purine rich element binding protein G -2.1383 0.0000
63125 ENSG00000225007 novel transcript -2.1378 0.0000
63124 ENSG00000185352 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 -2.1377 0.0000
63123 ENSG00000276092 novel transcript, sense intronic to CCDC102B -2.1376 0.0000
63122 ENSG00000231963 novel transcript -2.1375 0.0000
63121 ENSG00000178412 novel transcript -2.1370 0.0000
63120 ENSG00000249894 novel transcript -2.1363 0.0000
63119 ENSG00000213376 GAPDHP71 glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 -2.1361 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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