Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773708
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773708
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M335
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000207299
NA
2.8074
0.0000
2
ENSG00000230551
novel transcript
2.8074
0.0000
3
ENSG00000234173
novel transcript, antisense to PCDH15
2.8074
0.0000
4
ENSG00000258387
Rho GTPase activating protein 17 (ARHGAP17) pseudogene
2.8074
0.0000
5
ENSG00000270857
ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene
2.8074
0.0000
6
ENSG00000223460
GAPDHP69
glyceraldehyde 3 phosphate dehydrogenase pseudogene 69
2.6304
0.0000
7
ENSG00000225406
ELF2P4
ELF2 pseudogene 4
2.5850
0.0000
8
ENSG00000241815
retinoblastoma binding protein 4 (RBBP4) pseudogene
2.5850
0.0001
9
ENSG00000267039
novel transcript, antisense to KIAA1328
2.3900
0.0000
10
ENSG00000256193
LINC00507
long intergenic non-protein coding RNA 507
2.3380
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000231992
novel transcript
-2.1388
0.0000
63127
ENSG00000178199
ZC3H12D
zinc finger CCCH-type containing 12D
-2.1387
0.0000
63126
ENSG00000172733
PURG
purine rich element binding protein G
-2.1383
0.0000
63125
ENSG00000225007
novel transcript
-2.1378
0.0000
63124
ENSG00000185352
HS6ST3
heparan sulfate 6-O-sulfotransferase 3
-2.1377
0.0000
63123
ENSG00000276092
novel transcript, sense intronic to CCDC102B
-2.1376
0.0000
63122
ENSG00000231963
novel transcript
-2.1375
0.0000
63121
ENSG00000178412
novel transcript
-2.1370
0.0000
63120
ENSG00000249894
novel transcript
-2.1363
0.0000
63119
ENSG00000213376
GAPDHP71
glyceraldehyde-3-phosphate dehydrogenase pseudogene 71
-2.1361
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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