Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773708

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773708 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M335	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000207299		NA	2.8074	0.0000
2	ENSG00000230551		novel transcript	2.8074	0.0000
3	ENSG00000234173		novel transcript, antisense to PCDH15	2.8074	0.0000
4	ENSG00000258387		Rho GTPase activating protein 17 (ARHGAP17) pseudogene	2.8074	0.0000
5	ENSG00000270857		ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene	2.8074	0.0000
6	ENSG00000223460	GAPDHP69	glyceraldehyde 3 phosphate dehydrogenase pseudogene 69	2.6304	0.0000
7	ENSG00000225406	ELF2P4	ELF2 pseudogene 4	2.5850	0.0000
8	ENSG00000241815		retinoblastoma binding protein 4 (RBBP4) pseudogene	2.5850	0.0001
9	ENSG00000267039		novel transcript, antisense to KIAA1328	2.3900	0.0000
10	ENSG00000256193	LINC00507	long intergenic non-protein coding RNA 507	2.3380	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000231992		novel transcript	-2.1388	0.0000
63127	ENSG00000178199	ZC3H12D	zinc finger CCCH-type containing 12D	-2.1387	0.0000
63126	ENSG00000172733	PURG	purine rich element binding protein G	-2.1383	0.0000
63125	ENSG00000225007		novel transcript	-2.1378	0.0000
63124	ENSG00000185352	HS6ST3	heparan sulfate 6-O-sulfotransferase 3	-2.1377	0.0000
63123	ENSG00000276092		novel transcript, sense intronic to CCDC102B	-2.1376	0.0000
63122	ENSG00000231963		novel transcript	-2.1375	0.0000
63121	ENSG00000178412		novel transcript	-2.1370	0.0000
63120	ENSG00000249894		novel transcript	-2.1363	0.0000
63119	ENSG00000213376	GAPDHP71	glyceraldehyde-3-phosphate dehydrogenase pseudogene 71	-2.1361	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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