SHOGoiN Cell Methylome: GSM2773709

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773709


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M336Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212611 NA 2.5850 0.0000
2 ENSG00000227945 novel transcript, antisense to PTPRK 2.5850 0.0000
3 ENSG00000253582 novel transcript 2.5850 0.0000
4 ENSG00000248574 ADAM20P2 ADAM metallopeptidase domain 20 pseudogene 2 2.3850 0.0000
5 ENSG00000216824 ZNF736P10Y zinc finger protein 736 pseudogene 10, Y-linked 2.3219 0.0000
6 ENSG00000226230 ubiquitin-fold modifier conjugating enzyme 1 (UFC1) pseudogene 2.3219 0.0001
8 ENSG00000238357 RNU7-148P RNA, U7 small nuclear 148 pseudogene 2.3219 0.0000
9 ENSG00000250213 COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX17) pseudogene 2.3219 0.0001
10 ENSG00000263581 MIR548X2 microRNA 548x-2 2.3219 0.0000
63332 ENSG00000178814 OPLAH 5-oxoprolinase, ATP-hydrolysing -2.0317 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000172732 MUS81 MUS81 structure-specific endonuclease subunit -2.0342 0.0000
63340 ENSG00000239726 RN7SL688P RNA, 7SL, cytoplasmic 688, pseudogene -2.0341 0.0000
63339 ENSG00000178026 LRRC75B leucine rich repeat containing 75B -2.0339 0.0000
63338 ENSG00000113070 HBEGF heparin binding EGF like growth factor -2.0339 0.0000
63337 ENSG00000185716 MOSMO modulator of smoothened -2.0337 0.0000
63336 ENSG00000137449 CPEB2 cytoplasmic polyadenylation element binding protein 2 -2.0335 0.0000
63335 ENSG00000176381 PRR18 proline rich 18 -2.0327 0.0000
63334 ENSG00000267378 novel transcript -2.0327 0.1609
63333 ENSG00000270195 novel transcript -2.0325 0.0000
63332 ENSG00000178814 OPLAH 5-oxoprolinase, ATP-hydrolysing -2.0317 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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