Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773709

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773709


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M336Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212611 Small nucleolar RNA SNORD30 2.5850 0.0000
2 ENSG00000227945 PTPRK-AS1 PTPRK antisense RNA 1 2.5850 0.0000
3 ENSG00000253582 novel transcript 2.5850 0.0000
4 ENSG00000248574 ADAM20P2 ADAM metallopeptidase domain 20 pseudogene 2 2.3850 0.0000
5 ENSG00000216824 ZNF736P10Y zinc finger protein 736 pseudogene 10, Y-linked 2.3219 0.0000
6 ENSG00000226230 ubiquitin-fold modifier conjugating enzyme 1 (UFC1) pseudogene 2.3219 0.0001
8 ENSG00000238357 RNU7-148P RNA, U7 small nuclear 148 pseudogene 2.3219 0.0000
9 ENSG00000250213 COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX17) pseudogene 2.3219 0.0001
10 ENSG00000263581 MIR548X2 microRNA 548x-2 2.3219 0.0000
63119 ENSG00000201321 RNA5S9 RNA, 5S ribosomal 9 -1.9861 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000107295 SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 -1.9898 0.0000
63127 ENSG00000199475 RN7SKP104 RN7SK pseudogene 104 -1.9896 0.0130
63126 ENSG00000244380 novel transcript, antisense to TMA7 -1.9896 0.0000
63125 ENSG00000170122 FOXD4 forkhead box D4 -1.9895 0.0000
63124 ENSG00000165704 HPRT1 hypoxanthine phosphoribosyltransferase 1 -1.9890 0.0000
63123 ENSG00000258232 novel transcript, antisense to TUBA1C -1.9887 0.0000
63122 ENSG00000250344 novel transcript -1.9867 0.0000
63121 ENSG00000073417 PDE8A phosphodiesterase 8A -1.9866 0.0000
63120 ENSG00000278952 TEC -1.9862 0.0000
63119 ENSG00000201321 RNA5S9 RNA, 5S ribosomal 9 -1.9861 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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