SHOGoiN Cell Methylome: GSM2773710

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773710


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M337Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187626 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2.5850 0.0000
2 ENSG00000213110 ring finger protein 11 (RNF11) pseudogene 2.3219 0.0003
3 ENSG00000220110 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0000
4 ENSG00000200796 RNU6-753P RNA, U6 small nuclear 753, pseudogene 2.0000 0.0022
5 ENSG00000232809 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 2.0000 0.0022
6 ENSG00000235535 TRDN-AS1 TRDN antisense RNA 1 2.0000 0.0022
7 ENSG00000258580 novel transcript, antisense to AKAP6 2.0000 0.0022
8 ENSG00000204253 HNRNPCP2 heterogeneous nuclear ribonucleoprotein C pseudogene 2 1.9914 0.0000
9 ENSG00000201499 RNU6-312P RNA, U6 small nuclear 312, pseudogene 1.9387 0.0000
10 ENSG00000258526 novel transcript 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267112 novel transcript, antisense to RAB27B -2.0000 1.0000
63340 ENSG00000261739 GOLGA8S golgin A8 family member S -2.0000 0.2440
63339 ENSG00000259852 IGHV1OR16-2 immunoglobulin heavy variable 1/OR16-2 (pseudogene) -2.0000 0.6157
63338 ENSG00000255055 MTND1P35 MT-ND1 pseudogene 35 -2.0000 0.3854
63337 ENSG00000253103 LINC01609 long intergenic non-protein coding RNA 1609 -2.0000 0.6157
63336 ENSG00000252772 RNU6-714P RNA, U6 small nuclear 714, pseudogene -2.0000 1.0000
63335 ENSG00000251882 RNU6-475P RNA, U6 small nuclear 475, pseudogene -2.0000 0.3854
63334 ENSG00000251473 nucleoporin 43kDa (NUP43) pseudogene -2.0000 1.0000
63333 ENSG00000251066 PDGFA associated protein 1 pseudogene -2.0000 0.6157
63332 ENSG00000242285 RPL6P8 ribosomal protein L6 pseudogene 8 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...