Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773710

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773710


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M337Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187626 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2.5850 0.0000
2 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 2.3219 0.0003
3 ENSG00000220110 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0000
4 ENSG00000200796 RNU6-753P RNA, U6 small nuclear 753, pseudogene 2.0000 0.0022
5 ENSG00000232809 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 2.0000 0.0022
6 ENSG00000235535 TRDN-AS1 TRDN antisense RNA 1 2.0000 0.0022
7 ENSG00000258580 novel transcript, antisense to AKAP6 2.0000 0.0022
8 ENSG00000204253 HNRNPCP2 heterogeneous nuclear ribonucleoprotein C pseudogene 2 1.9914 0.0000
9 ENSG00000201499 RNU6-312P RNA, U6 small nuclear 312, pseudogene 1.9387 0.0000
10 ENSG00000258526 novel transcript 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000146676 PURB purine rich element binding protein B -1.9460 0.0000
63127 ENSG00000199038 MIR210 microRNA 210 -1.9457 0.0000
63126 ENSG00000163626 COX18 cytochrome c oxidase assembly factor COX18 -1.9456 0.0000
63125 ENSG00000255527 tripartite motif-containing 43 (TRIM43) pseudogene -1.9455 0.0000
63124 ENSG00000225510 PCDH8P1 protocadherin 8 pseudogene 1 -1.9450 0.0000
63123 ENSG00000279726 novel transcript, antisense to PCDHA5, PCDHA4, PCDHA3, PCDHA2 and PCDHA1 -1.9447 0.0000
63122 ENSG00000160948 VPS28 VPS28 subunit of ESCRT-I -1.9445 0.0000
63121 ENSG00000225100 DPY19L2P5 DPY19L2 pseudogene 5 -1.9445 0.0000
63120 ENSG00000168283 BMI1 BMI1 proto-oncogene, polycomb ring finger -1.9444 0.0000
63119 ENSG00000119862 LGALSL galectin like -1.9442 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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