Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773711

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773711


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M338Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000221840 OR4A5 olfactory receptor family 4 subfamily A member 5 2.5382 0.0000
2 ENSG00000230584 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 2.4534 0.0000
3 ENSG00000201860 Y RNA 2.3219 0.0002
4 ENSG00000232159 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 2.3219 0.0002
5 ENSG00000251844 NA 2.3219 0.0002
6 ENSG00000254832 OR4A40P olfactory receptor family 4 subfamily A member 40 pseudogene 2.3219 0.0002
7 ENSG00000272750 novel transcript, antisense to MIA3 2.1377 0.0000
8 ENSG00000237314 RPL12P39 ribosomal protein L12 pseudogene 39 2.0323 0.0000
9 ENSG00000265499 MIR3156-2 microRNA 3156-2 2.0306 0.0000
10 ENSG00000172572 PDE3A phosphodiesterase 3A 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000181085 MAPK15 mitogen-activated protein kinase 15 -2.0379 0.0000
63127 ENSG00000236834 LINC00421 long intergenic non-protein coding RNA 421 -2.0374 0.0000
63126 ENSG00000228133 novel transcript, antisense to RTN4RL1 -2.0372 0.0000
63125 ENSG00000255561 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 -2.0372 0.0000
63124 ENSG00000137720 C11orf1 chromosome 11 open reading frame 1 -2.0372 0.0000
63123 ENSG00000177839 PCDHB9 protocadherin beta 9 -2.0371 0.0000
63122 ENSG00000235042 SMARCAL1-AS1 SMARCAL1 antisense RNA 1 -2.0369 0.0000
63121 ENSG00000266929 novel transcript -2.0368 0.0000
63120 ENSG00000127993 RBM48 RNA binding motif protein 48 -2.0368 0.0000
63119 ENSG00000277469 NA -2.0365 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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