Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773711
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773711
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M338
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000221840
OR4A5
olfactory receptor family 4 subfamily A member 5
2.5382
0.0000
2
ENSG00000230584
CCT5P2
chaperonin containing TCP1 subunit 5 pseudogene 2
2.4534
0.0000
3
ENSG00000201860
Y RNA
2.3219
0.0002
4
ENSG00000232159
RAB9BP1
RAB9B, member RAS oncogene family pseudogene 1
2.3219
0.0002
5
ENSG00000251844
NA
2.3219
0.0002
6
ENSG00000254832
OR4A40P
olfactory receptor family 4 subfamily A member 40 pseudogene
2.3219
0.0002
7
ENSG00000272750
novel transcript, antisense to MIA3
2.1377
0.0000
8
ENSG00000237314
RPL12P39
ribosomal protein L12 pseudogene 39
2.0323
0.0000
9
ENSG00000265499
MIR3156-2
microRNA 3156-2
2.0306
0.0000
10
ENSG00000172572
PDE3A
phosphodiesterase 3A
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000181085
MAPK15
mitogen-activated protein kinase 15
-2.0379
0.0000
63127
ENSG00000236834
LINC00421
long intergenic non-protein coding RNA 421
-2.0374
0.0000
63126
ENSG00000228133
novel transcript, antisense to RTN4RL1
-2.0372
0.0000
63125
ENSG00000255561
FDXACB1
ferredoxin-fold anticodon binding domain containing 1
-2.0372
0.0000
63124
ENSG00000137720
C11orf1
chromosome 11 open reading frame 1
-2.0372
0.0000
63123
ENSG00000177839
PCDHB9
protocadherin beta 9
-2.0371
0.0000
63122
ENSG00000235042
SMARCAL1-AS1
SMARCAL1 antisense RNA 1
-2.0369
0.0000
63121
ENSG00000266929
novel transcript
-2.0368
0.0000
63120
ENSG00000127993
RBM48
RNA binding motif protein 48
-2.0368
0.0000
63119
ENSG00000277469
NA
-2.0365
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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