SHOGoiN Cell Methylome: GSM2773711
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773711 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M338 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000221840 | OR4A5 | olfactory receptor family 4 subfamily A member 5 | 2.5382 | 0.0000 |
| 2 | ENSG00000230584 | CCT5P2 | chaperonin containing TCP1 subunit 5 pseudogene 2 | 2.4534 | 0.0000 |
| 3 | ENSG00000201860 | NA | 2.3219 | 0.0002 | |
| 4 | ENSG00000232159 | RAB9BP1 | RAB9B, member RAS oncogene family pseudogene 1 | 2.3219 | 0.0002 |
| 5 | ENSG00000251844 | NA | 2.3219 | 0.0002 | |
| 6 | ENSG00000254832 | OR4A40P | olfactory receptor family 4 subfamily A member 40 pseudogene | 2.3219 | 0.0002 |
| 7 | ENSG00000272750 | novel transcript, antisense to MIA3 | 2.1377 | 0.0000 | |
| 8 | ENSG00000237314 | RPL12P39 | ribosomal protein L12 pseudogene 39 | 2.0323 | 0.0000 |
| 9 | ENSG00000265499 | MIR3156-2 | microRNA 3156-2 | 2.0306 | 0.0000 |
| 10 | ENSG00000172572 | PDE3A | phosphodiesterase 3A | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000139800 | ZIC5 | Zic family member 5 | -2.1096 | 0.0000 |
| 63340 | ENSG00000233728 | novel transcript | -2.1094 | 0.0000 | |
| 63339 | ENSG00000263482 | ANTXRLP1 | ANTXR like pseudogene 1 | -2.1093 | 0.0000 |
| 63338 | ENSG00000107443 | CCNJ | cyclin J | -2.1090 | 0.0000 |
| 63337 | ENSG00000283377 | mitochondrially encoded NADH dehydrogenase 1 (MT-ND1) pseudogene | -2.1083 | 0.0032 | |
| 63336 | ENSG00000214891 | TRIM64C | tripartite motif containing 64C | -2.1074 | 0.0000 |
| 63335 | ENSG00000198046 | ZNF667 | zinc finger protein 667 | -2.1073 | 0.0000 |
| 63334 | ENSG00000233819 | LCEP1 | late cornified envelope pseudogene 1 | -2.1073 | 0.6238 |
| 63333 | ENSG00000283213 | novel transcript | -2.1071 | 0.0000 | |
| 63332 | ENSG00000245060 | LINC00847 | long intergenic non-protein coding RNA 847 | -2.1068 | 0.0000 |
