SHOGoiN Cell Methylome: GSM2773711

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773711


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M338Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000221840 OR4A5 olfactory receptor family 4 subfamily A member 5 2.5382 0.0000
2 ENSG00000230584 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 2.4534 0.0000
3 ENSG00000201860 NA 2.3219 0.0002
4 ENSG00000232159 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 2.3219 0.0002
5 ENSG00000251844 NA 2.3219 0.0002
6 ENSG00000254832 OR4A40P olfactory receptor family 4 subfamily A member 40 pseudogene 2.3219 0.0002
7 ENSG00000272750 novel transcript, antisense to MIA3 2.1377 0.0000
8 ENSG00000237314 RPL12P39 ribosomal protein L12 pseudogene 39 2.0323 0.0000
9 ENSG00000265499 MIR3156-2 microRNA 3156-2 2.0306 0.0000
10 ENSG00000172572 PDE3A phosphodiesterase 3A 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000139800 ZIC5 Zic family member 5 -2.1096 0.0000
63340 ENSG00000233728 novel transcript -2.1094 0.0000
63339 ENSG00000263482 ANTXRLP1 ANTXR like pseudogene 1 -2.1093 0.0000
63338 ENSG00000107443 CCNJ cyclin J -2.1090 0.0000
63337 ENSG00000283377 mitochondrially encoded NADH dehydrogenase 1 (MT-ND1) pseudogene -2.1083 0.0032
63336 ENSG00000214891 TRIM64C tripartite motif containing 64C -2.1074 0.0000
63335 ENSG00000198046 ZNF667 zinc finger protein 667 -2.1073 0.0000
63334 ENSG00000233819 LCEP1 late cornified envelope pseudogene 1 -2.1073 0.6238
63333 ENSG00000283213 novel transcript -2.1071 0.0000
63332 ENSG00000245060 LINC00847 long intergenic non-protein coding RNA 847 -2.1068 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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