SHOGoiN Cell Methylome: GSM2773712

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773712


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M339Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224962 PSAT1P4 phosphoserine aminotransferase 1 pseudogene 4 2.3219 0.0003
2 ENSG00000278072 NA 2.3219 0.0003
3 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.1610 0.0000
4 ENSG00000139330 KERA keratocan 2.0000 0.0022
5 ENSG00000213285 RPL23AP45 ribosomal protein L23a pseudogene 45 2.0000 0.0000
6 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 2.0000 0.0022
7 ENSG00000222394 NA 2.0000 0.0000
8 ENSG00000233589 novel transcript 2.0000 0.0000
9 ENSG00000234052 LINC01673 long intergenic non-protein coding RNA 1673 2.0000 0.0022
10 ENSG00000249052 novel transcript 2.0000 0.0022

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000151135 TMEM263 transmembrane protein 263 -2.0176 0.0000
63340 ENSG00000254208 novel transcript, antisense to E2F5 -2.0175 0.0000
63339 ENSG00000281859 SNORD38B small nucleolar RNA, C/D box 38B -2.0175 0.0000
63338 ENSG00000207421 SNORD38B small nucleolar RNA, C/D box 38B -2.0175 0.0000
63337 ENSG00000213926 MSRB1P1 methionine sulfoxide reductase B1 pseudogene 1 -2.0173 0.0000
63336 ENSG00000202167 RNU1-114P RNA, U1 small nuclear 114, pseudogene -2.0173 0.0000
63335 ENSG00000186493 C5orf38 chromosome 5 open reading frame 38 -2.0168 0.0000
63334 ENSG00000172086 KRCC1 lysine rich coiled-coil 1 -2.0165 0.0000
63333 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.0162 0.0000
63332 ENSG00000223953 C1QTNF5 C1q and TNF related 5 -2.0157 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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