Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773712

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773712


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M339Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224962 PSAT1P4 phosphoserine aminotransferase 1 pseudogene 4 2.3219 0.0003
2 ENSG00000278072 NA 2.3219 0.0003
3 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.1610 0.0000
4 ENSG00000139330 KERA keratocan 2.0000 0.0022
5 ENSG00000213285 RPL23AP45 ribosomal protein L23a pseudogene 45 2.0000 0.0000
6 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 2.0000 0.0022
7 ENSG00000222394 Y RNA 2.0000 0.0000
8 ENSG00000233589 novel transcript 2.0000 0.0000
9 ENSG00000234052 LINC01673 long intergenic non-protein coding RNA 1673 2.0000 0.0022
10 ENSG00000249052 novel transcript 2.0000 0.0022

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227640 SOX21-AS1 SOX21 antisense divergent transcript 1 -1.9654 0.0000
63127 ENSG00000253159 PCDHGA12 protocadherin gamma subfamily A, 12 -1.9653 0.0000
63126 ENSG00000205930 C21orf62-AS1 C21orf62 antisense RNA 1 -1.9651 0.0000
63125 ENSG00000264956 novel transcript -1.9645 0.0000
63124 ENSG00000152795 HNRNPDL heterogeneous nuclear ribonucleoprotein D like -1.9644 0.0000
63123 ENSG00000204642 HLA-F major histocompatibility complex, class I, F -1.9644 0.0000
63122 ENSG00000231227 novel transcript -1.9644 0.0000
63121 ENSG00000066583 ISOC1 isochorismatase domain containing 1 -1.9642 0.0000
63120 ENSG00000139211 AMIGO2 adhesion molecule with Ig like domain 2 -1.9641 0.0000
10 ENSG00000249052 novel transcript 2.0000 0.0022

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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