Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773713

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773713


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M340Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224599 BMS1P12 BMS1 pseudogene 12 2.5850 0.0000
2 ENSG00000224935 novel transcript 2.1610 0.0000
3 ENSG00000256564 novel transcript 2.0763 0.0000
4 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.0000 0.0019
5 ENSG00000227138 pseudogene similar to part of ribosomal protein S3A RPS3A 1.6887 0.0000
6 ENSG00000249910 TRIM51CP tripartite motif-containing 51C, pseudogene 1.6610 0.0000
7 ENSG00000188993 LRRC66 leucine rich repeat containing 66 1.6473 0.0000
8 ENSG00000253523 novel transcript 1.6356 0.0000
9 ENSG00000180673 EXOC5P1 exocyst complex component 5 pseudogene 1 1.5850 0.0152
10 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 1.5850 0.0152

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000206625 RNU6-1 RNA, U6 small nuclear 1 -1.8763 0.0000
63127 ENSG00000207608 MIR127 microRNA 127 -1.8760 0.0000
63126 ENSG00000277888 MIR6846 microRNA 6846 -1.8758 0.0000
63125 ENSG00000186895 FGF3 fibroblast growth factor 3 -1.8754 0.0000
63124 ENSG00000176678 FOXL1 forkhead box L1 -1.8748 0.0000
63123 ENSG00000179387 ELMOD2 ELMO domain containing 2 -1.8744 0.0000
63122 ENSG00000214578 HMGN2P15 high mobility group nucleosomal binding domain 2 pseudogene 15 -1.8741 0.0000
63121 ENSG00000270177 PPP2CA-DT PPP2CA divergent transcript -1.8739 0.0000
63120 ENSG00000171889 MIR31HG MIR31 host gene -1.8738 0.0000
63119 ENSG00000106803 SEC61B SEC61 translocon subunit beta -1.8736 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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