Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773714

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773714


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M341Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229175 LINC00382 long intergenic non-protein coding RNA 382 2.7459 0.0000
2 ENSG00000233349 LINC00333 long intergenic non-protein coding RNA 333 2.5850 0.0000
3 ENSG00000273919 novel transcript 2.5850 0.0000
4 ENSG00000242118 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene 2.3219 0.0002
5 ENSG00000250827 MFSD4BP1 major facilitator superfamily domain containing 4B pseudogene 1 2.3219 0.0002
6 ENSG00000254848 OR5BN1P olfactory receptor family 5 subfamily BN member 1 pseudogene 2.3219 0.0002
7 ENSG00000279703 TEC 2.3219 0.0002
8 ENSG00000232035 novel transcript 2.1114 0.0000
9 ENSG00000248553 OR52H2P olfactory receptor family 52 subfamily H member 2 pseudogene 2.0566 0.0000
10 ENSG00000123447 TYRL tyrosinase like (pseudogene) 2.0000 0.0017

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000158528 PPP1R9A protein phosphatase 1 regulatory subunit 9A -2.0492 0.0000
63127 ENSG00000159348 CYB5R1 cytochrome b5 reductase 1 -2.0491 0.0000
63126 ENSG00000100399 CHADL chondroadherin like -2.0490 0.0000
63125 ENSG00000267259 ERVE-1 endogenous retrovirus group E member 1 -2.0486 0.0000
63124 ENSG00000119801 YPEL5 yippee like 5 -2.0481 0.0000
63123 ENSG00000188042 ARL4C ADP ribosylation factor like GTPase 4C -2.0477 0.0000
63122 ENSG00000245105 A2M-AS1 A2M antisense RNA 1 -2.0477 0.0000
63121 ENSG00000171772 SYCE1 synaptonemal complex central element protein 1 -2.0476 0.0000
63120 ENSG00000253873 PCDHGA11 protocadherin gamma subfamily A, 11 -2.0475 0.0000
63119 ENSG00000243738 RN7SL181P RNA, 7SL, cytoplasmic 181, pseudogene -2.0474 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...