Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773714
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773714
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M341
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000229175
LINC00382
long intergenic non-protein coding RNA 382
2.7459
0.0000
2
ENSG00000233349
LINC00333
long intergenic non-protein coding RNA 333
2.5850
0.0000
3
ENSG00000273919
novel transcript
2.5850
0.0000
4
ENSG00000242118
RN7SL201P
RNA, 7SL, cytoplasmic 201, pseudogene
2.3219
0.0002
5
ENSG00000250827
MFSD4BP1
major facilitator superfamily domain containing 4B pseudogene 1
2.3219
0.0002
6
ENSG00000254848
OR5BN1P
olfactory receptor family 5 subfamily BN member 1 pseudogene
2.3219
0.0002
7
ENSG00000279703
TEC
2.3219
0.0002
8
ENSG00000232035
novel transcript
2.1114
0.0000
9
ENSG00000248553
OR52H2P
olfactory receptor family 52 subfamily H member 2 pseudogene
2.0566
0.0000
10
ENSG00000123447
TYRL
tyrosinase like (pseudogene)
2.0000
0.0017
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000158528
PPP1R9A
protein phosphatase 1 regulatory subunit 9A
-2.0492
0.0000
63127
ENSG00000159348
CYB5R1
cytochrome b5 reductase 1
-2.0491
0.0000
63126
ENSG00000100399
CHADL
chondroadherin like
-2.0490
0.0000
63125
ENSG00000267259
ERVE-1
endogenous retrovirus group E member 1
-2.0486
0.0000
63124
ENSG00000119801
YPEL5
yippee like 5
-2.0481
0.0000
63123
ENSG00000188042
ARL4C
ADP ribosylation factor like GTPase 4C
-2.0477
0.0000
63122
ENSG00000245105
A2M-AS1
A2M antisense RNA 1
-2.0477
0.0000
63121
ENSG00000171772
SYCE1
synaptonemal complex central element protein 1
-2.0476
0.0000
63120
ENSG00000253873
PCDHGA11
protocadherin gamma subfamily A, 11
-2.0475
0.0000
63119
ENSG00000243738
RN7SL181P
RNA, 7SL, cytoplasmic 181, pseudogene
-2.0474
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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