Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773714

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773714 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M341	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000229175	LINC00382	long intergenic non-protein coding RNA 382	2.7459	0.0000
2	ENSG00000233349	LINC00333	long intergenic non-protein coding RNA 333	2.5850	0.0000
3	ENSG00000273919		novel transcript	2.5850	0.0000
4	ENSG00000242118	RN7SL201P	RNA, 7SL, cytoplasmic 201, pseudogene	2.3219	0.0002
5	ENSG00000250827	MFSD4BP1	major facilitator superfamily domain containing 4B pseudogene 1	2.3219	0.0002
6	ENSG00000254848	OR5BN1P	olfactory receptor family 5 subfamily BN member 1 pseudogene	2.3219	0.0002
7	ENSG00000279703		TEC	2.3219	0.0002
8	ENSG00000232035		novel transcript	2.1114	0.0000
9	ENSG00000248553	OR52H2P	olfactory receptor family 52 subfamily H member 2 pseudogene	2.0566	0.0000
10	ENSG00000123447	TYRL	tyrosinase like (pseudogene)	2.0000	0.0017

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000158528	PPP1R9A	protein phosphatase 1 regulatory subunit 9A	-2.0492	0.0000
63127	ENSG00000159348	CYB5R1	cytochrome b5 reductase 1	-2.0491	0.0000
63126	ENSG00000100399	CHADL	chondroadherin like	-2.0490	0.0000
63125	ENSG00000267259	ERVE-1	endogenous retrovirus group E member 1	-2.0486	0.0000
63124	ENSG00000119801	YPEL5	yippee like 5	-2.0481	0.0000
63123	ENSG00000188042	ARL4C	ADP ribosylation factor like GTPase 4C	-2.0477	0.0000
63122	ENSG00000245105	A2M-AS1	A2M antisense RNA 1	-2.0477	0.0000
63121	ENSG00000171772	SYCE1	synaptonemal complex central element protein 1	-2.0476	0.0000
63120	ENSG00000253873	PCDHGA11	protocadherin gamma subfamily A, 11	-2.0475	0.0000
63119	ENSG00000243738	RN7SL181P	RNA, 7SL, cytoplasmic 181, pseudogene	-2.0474	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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