SHOGoiN Cell Methylome: GSM2773714

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773714


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M341Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229175 LINC00382 long intergenic non-protein coding RNA 382 2.7459 0.0000
2 ENSG00000233349 LINC00333 long intergenic non-protein coding RNA 333 2.5850 0.0000
3 ENSG00000273919 novel transcript 2.5850 0.0000
4 ENSG00000242118 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene 2.3219 0.0002
5 ENSG00000250827 MFSD4BP1 major facilitator superfamily domain containing 4B pseudogene 1 2.3219 0.0002
6 ENSG00000254848 OR5BN1P olfactory receptor family 5 subfamily BN member 1 pseudogene 2.3219 0.0002
7 ENSG00000279703 TEC 2.3219 0.0002
8 ENSG00000232035 novel transcript 2.1114 0.0000
9 ENSG00000248553 OR52H2P olfactory receptor family 52 subfamily H member 2 pseudogene 2.0566 0.0000
10 ENSG00000123447 TYRL tyrosinase like (pseudogene) 2.0000 0.0017

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000273567 REXO1L3P REXO1 like 3, pseudogene -2.1064 0.0000
63340 ENSG00000242509 RN7SL156P RNA, 7SL, cytoplasmic 156, pseudogene -2.1061 0.0000
63339 ENSG00000138134 STAMBPL1 STAM binding protein like 1 -2.1059 0.0000
63338 ENSG00000256340 ABCC6P1 ATP binding cassette subfamily C member 6 pseudogene 1 -2.1059 0.0000
63337 ENSG00000144224 UBXN4 UBX domain protein 4 -2.1056 0.0000
63336 ENSG00000171189 GRIK1 glutamate ionotropic receptor kainate type subunit 1 -2.1054 0.0000
63335 ENSG00000199352 RNA5S1 RNA, 5S ribosomal 1 -2.1038 0.0000
63334 ENSG00000276753 MIR6821 microRNA 6821 -2.1036 0.0000
63333 ENSG00000279875 TEC -2.1028 0.0000
63332 ENSG00000050030 NEXMIF neurite extension and migration factor -2.1024 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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