SHOGoiN Cell Methylome: GSM2773714
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773714 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M341 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000229175 | LINC00382 | long intergenic non-protein coding RNA 382 | 2.7459 | 0.0000 |
| 2 | ENSG00000233349 | LINC00333 | long intergenic non-protein coding RNA 333 | 2.5850 | 0.0000 |
| 3 | ENSG00000273919 | novel transcript | 2.5850 | 0.0000 | |
| 4 | ENSG00000242118 | RN7SL201P | RNA, 7SL, cytoplasmic 201, pseudogene | 2.3219 | 0.0002 |
| 5 | ENSG00000250827 | MFSD4BP1 | major facilitator superfamily domain containing 4B pseudogene 1 | 2.3219 | 0.0002 |
| 6 | ENSG00000254848 | OR5BN1P | olfactory receptor family 5 subfamily BN member 1 pseudogene | 2.3219 | 0.0002 |
| 7 | ENSG00000279703 | TEC | 2.3219 | 0.0002 | |
| 8 | ENSG00000232035 | novel transcript | 2.1114 | 0.0000 | |
| 9 | ENSG00000248553 | OR52H2P | olfactory receptor family 52 subfamily H member 2 pseudogene | 2.0566 | 0.0000 |
| 10 | ENSG00000123447 | TYRL | tyrosinase like (pseudogene) | 2.0000 | 0.0017 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000273567 | REXO1L3P | REXO1 like 3, pseudogene | -2.1064 | 0.0000 |
| 63340 | ENSG00000242509 | RN7SL156P | RNA, 7SL, cytoplasmic 156, pseudogene | -2.1061 | 0.0000 |
| 63339 | ENSG00000138134 | STAMBPL1 | STAM binding protein like 1 | -2.1059 | 0.0000 |
| 63338 | ENSG00000256340 | ABCC6P1 | ATP binding cassette subfamily C member 6 pseudogene 1 | -2.1059 | 0.0000 |
| 63337 | ENSG00000144224 | UBXN4 | UBX domain protein 4 | -2.1056 | 0.0000 |
| 63336 | ENSG00000171189 | GRIK1 | glutamate ionotropic receptor kainate type subunit 1 | -2.1054 | 0.0000 |
| 63335 | ENSG00000199352 | RNA5S1 | RNA, 5S ribosomal 1 | -2.1038 | 0.0000 |
| 63334 | ENSG00000276753 | MIR6821 | microRNA 6821 | -2.1036 | 0.0000 |
| 63333 | ENSG00000279875 | TEC | -2.1028 | 0.0000 | |
| 63332 | ENSG00000050030 | NEXMIF | neurite extension and migration factor | -2.1024 | 0.0000 |
