SHOGoiN Cell Methylome: GSM2773715

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773715


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M342Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250315 ubiquitin-conjugating enzyme E2D 4 (putative) (UBE2D4) pseudogene 3.1699 0.0000
2 ENSG00000253581 developmental pluripotency associated 3 (DPPA3) pseudogene 2.5850 0.0000
3 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 2.3219 0.0002
4 ENSG00000222210 RN7SKP65 RN7SK pseudogene 65 2.3219 0.0002
5 ENSG00000233676 FDPSP6 farnesyl diphosphate synthase pseudogene 6 2.3219 0.0000
6 ENSG00000257845 LINC02294 long intergenic non-protein coding RNA 2294 2.3219 0.0000
7 ENSG00000277515 RN7SL495P RNA, 7SL, cytoplasmic 495, pseudogene 2.3219 0.0002
8 ENSG00000226338 pseudogene similar to part of phospholipase C, gamma 1 PLCG1 2.2925 0.0000
9 ENSG00000230945 LINC01507 long intergenic non-protein coding RNA 1507 2.0566 0.0000
10 ENSG00000184258 CDR1 cerebellar degeneration related protein 1 2.0158 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000145428 RNF175 ring finger protein 175 -1.9947 0.0000
63340 ENSG00000282317 novel transcript -1.9945 0.0000
63339 ENSG00000284237 novel transcript -1.9936 0.0000
63338 ENSG00000257839 novel transcript, antisense to PHLDA1 -1.9935 0.0000
63337 ENSG00000262899 novel transcript -1.9932 0.0000
63336 ENSG00000251385 MTCYBP16 MT-CYB pseudogene 16 -1.9932 0.2448
63335 ENSG00000212422 NA -1.9914 0.3867
63334 ENSG00000099246 RAB18 RAB18, member RAS oncogene family -1.9914 0.0000
63333 ENSG00000284194 SCO2 SCO cytochrome c oxidase assembly protein 2 -1.9900 0.0000
63332 ENSG00000187658 C5orf52 chromosome 5 open reading frame 52 -1.9897 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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