Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773715

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773715


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M342Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250315 ubiquitin-conjugating enzyme E2D 4 (putative) (UBE2D4) pseudogene 3.1699 0.0000
2 ENSG00000253581 developmental pluripotency associated 3 (DPPA3) pseudogene 2.5850 0.0000
3 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 2.3219 0.0002
4 ENSG00000222210 RN7SKP65 RN7SK pseudogene 65 2.3219 0.0002
5 ENSG00000233676 FDPSP6 farnesyl diphosphate synthase pseudogene 6 2.3219 0.0000
6 ENSG00000257845 LINC02294 long intergenic non-protein coding RNA 2294 2.3219 0.0000
7 ENSG00000277515 RN7SL495P RNA, 7SL, cytoplasmic 495, pseudogene 2.3219 0.0002
8 ENSG00000226338 pseudogene similar to part of phospholipase C, gamma 1 PLCG1 2.2925 0.0000
9 ENSG00000230945 LINC01507 long intergenic non-protein coding RNA 1507 2.0566 0.0000
63119 ENSG00000006459 KDM7A lysine demethylase 7A -1.9137 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000261915 novel protein -1.9162 0.0000
63127 ENSG00000223692 DIP2A-IT1 DIP2A intronic transcript 1 -1.9155 0.0000
63126 ENSG00000236896 novel transcript -1.9154 0.0000
63125 ENSG00000274617 NA -1.9150 0.0000
63124 ENSG00000103404 USP31 ubiquitin specific peptidase 31 -1.9147 0.0000
63123 ENSG00000039600 SOX30 SRY-box transcription factor 30 -1.9146 0.0000
63122 ENSG00000115884 SDC1 syndecan 1 -1.9143 0.0000
63121 ENSG00000214402 LCNL1 lipocalin like 1 -1.9138 0.0000
63120 ENSG00000180549 FUT7 fucosyltransferase 7 -1.9137 0.0000
63119 ENSG00000006459 KDM7A lysine demethylase 7A -1.9137 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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