Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773716

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773716


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M343Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212100 MIR764 microRNA 764 2.5850 0.0000
2 ENSG00000227279 novel transcript, antisense to CDH2 2.5850 0.0000
3 ENSG00000232149 FERP1 FER tyrosine kinase pseudogene 1 2.1454 0.0000
4 ENSG00000199035 MIR103A1 microRNA 103a-1 2.0000 0.0024
5 ENSG00000200350 RNU6-1285P RNA, U6 small nuclear 1285, pseudogene 2.0000 0.0000
6 ENSG00000207428 RNU6-95P RNA, U6 small nuclear 95, pseudogene 2.0000 0.0024
7 ENSG00000219736 nucleoporin 50kDa (NUP50) pseudogene 2.0000 0.0024
8 ENSG00000224440 CXorf51A chromosome X open reading frame 51A 2.0000 0.0000
9 ENSG00000230320 BEND7P1 BEN domain containing 7 pseudogene 1 2.0000 0.0000
10 ENSG00000235699 CXorf51B chromosome X open reading frame 51B 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000228829 pseudogene similar to part of GTF2I repeat domain containing 1 GTF2IRD1 -1.8641 0.0000
63127 ENSG00000151694 ADAM17 ADAM metallopeptidase domain 17 -1.8640 0.0000
63126 ENSG00000184557 SOCS3 suppressor of cytokine signaling 3 -1.8635 0.0000
63125 ENSG00000248783 novel transcript -1.8635 0.0013
63124 ENSG00000127955 GNAI1 G protein subunit alpha i1 -1.8629 0.0000
63123 ENSG00000101132 PFDN4 prefoldin subunit 4 -1.8627 0.0000
63122 ENSG00000215221 UBA52P6 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6 -1.8625 0.0000
63121 ENSG00000269332 GOLGA2P9 GOLGA2 pseudogene 9 -1.8622 0.0003
63120 ENSG00000283829 MIR378I microRNA 378i -1.8619 0.0000
63119 ENSG00000229619 MBNL1-AS1 MBNL1 antisense RNA 1 -1.8618 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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