Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773716

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773716 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M343	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000212100	MIR764	microRNA 764	2.5850	0.0000
2	ENSG00000227279		novel transcript, antisense to CDH2	2.5850	0.0000
3	ENSG00000232149	FERP1	FER tyrosine kinase pseudogene 1	2.1454	0.0000
4	ENSG00000199035	MIR103A1	microRNA 103a-1	2.0000	0.0024
5	ENSG00000200350	RNU6-1285P	RNA, U6 small nuclear 1285, pseudogene	2.0000	0.0000
6	ENSG00000207428	RNU6-95P	RNA, U6 small nuclear 95, pseudogene	2.0000	0.0024
7	ENSG00000219736		nucleoporin 50kDa (NUP50) pseudogene	2.0000	0.0024
8	ENSG00000224440	CXorf51A	chromosome X open reading frame 51A	2.0000	0.0000
9	ENSG00000230320	BEND7P1	BEN domain containing 7 pseudogene 1	2.0000	0.0000
10	ENSG00000235699	CXorf51B	chromosome X open reading frame 51B	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000228829		pseudogene similar to part of GTF2I repeat domain containing 1 GTF2IRD1	-1.8641	0.0000
63127	ENSG00000151694	ADAM17	ADAM metallopeptidase domain 17	-1.8640	0.0000
63126	ENSG00000184557	SOCS3	suppressor of cytokine signaling 3	-1.8635	0.0000
63125	ENSG00000248783		novel transcript	-1.8635	0.0013
63124	ENSG00000127955	GNAI1	G protein subunit alpha i1	-1.8629	0.0000
63123	ENSG00000101132	PFDN4	prefoldin subunit 4	-1.8627	0.0000
63122	ENSG00000215221	UBA52P6	ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6	-1.8625	0.0000
63121	ENSG00000269332	GOLGA2P9	GOLGA2 pseudogene 9	-1.8622	0.0003
63120	ENSG00000283829	MIR378I	microRNA 378i	-1.8619	0.0000
63119	ENSG00000229619	MBNL1-AS1	MBNL1 antisense RNA 1	-1.8618	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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