SHOGoiN Cell Methylome: GSM2773716

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773716


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M343Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212100 MIR764 microRNA 764 2.5850 0.0000
2 ENSG00000227279 novel transcript, antisense to CDH2 2.5850 0.0000
3 ENSG00000232149 FERP1 FER tyrosine kinase pseudogene 1 2.1454 0.0000
4 ENSG00000199035 MIR103A1 microRNA 103a-1 2.0000 0.0024
5 ENSG00000200350 RNU6-1285P RNA, U6 small nuclear 1285, pseudogene 2.0000 0.0000
6 ENSG00000207428 RNU6-95P RNA, U6 small nuclear 95, pseudogene 2.0000 0.0024
7 ENSG00000219736 nucleoporin 50kDa (NUP50) pseudogene 2.0000 0.0024
8 ENSG00000224440 CXorf51A chromosome X open reading frame 51A 2.0000 0.0000
9 ENSG00000230320 BEND7P1 BEN domain containing 7 pseudogene 1 2.0000 0.0000
10 ENSG00000235699 CXorf51B chromosome X open reading frame 51B 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000236466 novel transcript -1.9238 0.0000
63340 ENSG00000235058 ZMYND10-AS1 ZMYND10 antisense RNA 1 -1.9238 0.0000
63339 ENSG00000135047 CTSL cathepsin L -1.9231 0.0004
63338 ENSG00000176855 KRT18P28 keratin 18 pseudogene 28 -1.9230 0.0000
63337 ENSG00000185090 MANEAL mannosidase endo-alpha like -1.9229 0.0000
63336 ENSG00000145743 FBXL17 F-box and leucine rich repeat protein 17 -1.9222 0.0000
63335 ENSG00000123728 RAP2C RAP2C, member of RAS oncogene family -1.9221 0.0000
63334 ENSG00000279491 TEC -1.9218 0.0000
63333 ENSG00000178233 TMEM151B transmembrane protein 151B -1.9214 0.0000
63332 ENSG00000120322 PCDHB8 protocadherin beta 8 -1.9211 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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