SHOGoiN Cell Methylome: GSM2773716
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773716 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M343 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000212100 | MIR764 | microRNA 764 | 2.5850 | 0.0000 |
| 2 | ENSG00000227279 | novel transcript, antisense to CDH2 | 2.5850 | 0.0000 | |
| 3 | ENSG00000232149 | FERP1 | FER tyrosine kinase pseudogene 1 | 2.1454 | 0.0000 |
| 4 | ENSG00000199035 | MIR103A1 | microRNA 103a-1 | 2.0000 | 0.0024 |
| 5 | ENSG00000200350 | RNU6-1285P | RNA, U6 small nuclear 1285, pseudogene | 2.0000 | 0.0000 |
| 6 | ENSG00000207428 | RNU6-95P | RNA, U6 small nuclear 95, pseudogene | 2.0000 | 0.0024 |
| 7 | ENSG00000219736 | nucleoporin 50kDa (NUP50) pseudogene | 2.0000 | 0.0024 | |
| 8 | ENSG00000224440 | CXorf51A | chromosome X open reading frame 51A | 2.0000 | 0.0000 |
| 9 | ENSG00000230320 | BEND7P1 | BEN domain containing 7 pseudogene 1 | 2.0000 | 0.0000 |
| 10 | ENSG00000235699 | CXorf51B | chromosome X open reading frame 51B | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000236466 | novel transcript | -1.9238 | 0.0000 | |
| 63340 | ENSG00000235058 | ZMYND10-AS1 | ZMYND10 antisense RNA 1 | -1.9238 | 0.0000 |
| 63339 | ENSG00000135047 | CTSL | cathepsin L | -1.9231 | 0.0004 |
| 63338 | ENSG00000176855 | KRT18P28 | keratin 18 pseudogene 28 | -1.9230 | 0.0000 |
| 63337 | ENSG00000185090 | MANEAL | mannosidase endo-alpha like | -1.9229 | 0.0000 |
| 63336 | ENSG00000145743 | FBXL17 | F-box and leucine rich repeat protein 17 | -1.9222 | 0.0000 |
| 63335 | ENSG00000123728 | RAP2C | RAP2C, member of RAS oncogene family | -1.9221 | 0.0000 |
| 63334 | ENSG00000279491 | TEC | -1.9218 | 0.0000 | |
| 63333 | ENSG00000178233 | TMEM151B | transmembrane protein 151B | -1.9214 | 0.0000 |
| 63332 | ENSG00000120322 | PCDHB8 | protocadherin beta 8 | -1.9211 | 0.0000 |
