Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773716
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773716
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M343
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000212100
MIR764
microRNA 764
2.5850
0.0000
2
ENSG00000227279
novel transcript, antisense to CDH2
2.5850
0.0000
3
ENSG00000232149
FERP1
FER tyrosine kinase pseudogene 1
2.1454
0.0000
4
ENSG00000199035
MIR103A1
microRNA 103a-1
2.0000
0.0024
5
ENSG00000200350
RNU6-1285P
RNA, U6 small nuclear 1285, pseudogene
2.0000
0.0000
6
ENSG00000207428
RNU6-95P
RNA, U6 small nuclear 95, pseudogene
2.0000
0.0024
7
ENSG00000219736
nucleoporin 50kDa (NUP50) pseudogene
2.0000
0.0024
8
ENSG00000224440
CXorf51A
chromosome X open reading frame 51A
2.0000
0.0000
9
ENSG00000230320
BEND7P1
BEN domain containing 7 pseudogene 1
2.0000
0.0000
10
ENSG00000235699
CXorf51B
chromosome X open reading frame 51B
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000228829
pseudogene similar to part of GTF2I repeat domain containing 1 GTF2IRD1
-1.8641
0.0000
63127
ENSG00000151694
ADAM17
ADAM metallopeptidase domain 17
-1.8640
0.0000
63126
ENSG00000184557
SOCS3
suppressor of cytokine signaling 3
-1.8635
0.0000
63125
ENSG00000248783
novel transcript
-1.8635
0.0013
63124
ENSG00000127955
GNAI1
G protein subunit alpha i1
-1.8629
0.0000
63123
ENSG00000101132
PFDN4
prefoldin subunit 4
-1.8627
0.0000
63122
ENSG00000215221
UBA52P6
ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6
-1.8625
0.0000
63121
ENSG00000269332
GOLGA2P9
GOLGA2 pseudogene 9
-1.8622
0.0003
63120
ENSG00000283829
MIR378I
microRNA 378i
-1.8619
0.0000
63119
ENSG00000229619
MBNL1-AS1
MBNL1 antisense RNA 1
-1.8618
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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