SHOGoiN Cell Methylome: GSM2773717

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773717


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M344Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207515 RNU6-555P RNA, U6 small nuclear 555, pseudogene 2.3219 0.0002
2 ENSG00000236880 ribosomal protein (RPS26) pseudogene 2.3219 0.0002
3 ENSG00000243671 RN7SL761P RNA, 7SL, cytoplasmic 761, pseudogene 2.3219 0.0002
4 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.0000 0.0019
5 ENSG00000259113 novel transcript 2.0000 0.0019
6 ENSG00000270528 family with sequence similarity 133, member A (FAM133A) pseudogene 2.0000 0.0019
7 ENSG00000237447 CDC27P2 cell division cycle 27 pseudogene 2 1.9534 0.0000
8 ENSG00000254351 ARL2BPP5 ADP ribosylation factor like GTPase 2 binding protein pseudogene 5 1.7765 0.0000
9 ENSG00000222432 NA 1.6864 0.0000
10 ENSG00000187653 TMSB4XP8 TMSB4X pseudogene 8 1.6258 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000136161 RCBTB2 RCC1 and BTB domain containing protein 2 -1.9722 0.0000
63340 ENSG00000264343 NOTCH2NLA notch 2 N-terminal like A -1.9719 0.0000
63339 ENSG00000175785 PRIMA1 proline rich membrane anchor 1 -1.9716 0.0000
63338 ENSG00000197696 NMB neuromedin B -1.9716 0.0000
63337 ENSG00000114850 SSR3 signal sequence receptor subunit 3 -1.9709 0.0000
63336 ENSG00000103966 EHD4 EH domain containing 4 -1.9704 0.0000
63335 ENSG00000170293 CMTM8 CKLF like MARVEL transmembrane domain containing 8 -1.9697 0.0000
63334 ENSG00000145975 FAM217A family with sequence similarity 217 member A -1.9695 0.0000
63333 ENSG00000237371 novel transcript -1.9695 0.0000
63332 ENSG00000270987 mitogen-activated protein kinase 1 interacting protein 1-like (MAPK1IP1L) pseudogene -1.9686 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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