Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773717

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773717


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M344Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207515 RNU6-555P RNA, U6 small nuclear 555, pseudogene 2.3219 0.0002
2 ENSG00000236880 RPS26P57 ribosomal protein S26 pseudogene 57 2.3219 0.0002
3 ENSG00000243671 RN7SL761P RNA, 7SL, cytoplasmic 761, pseudogene 2.3219 0.0002
4 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.0000 0.0019
5 ENSG00000259113 novel transcript 2.0000 0.0019
6 ENSG00000270528 FAM133EP family with sequence similarity 133 member E, pseudogene 2.0000 0.0019
7 ENSG00000237447 CDC27P2 cell division cycle 27 pseudogene 2 1.9534 0.0000
8 ENSG00000254351 ARL2BPP5 ADP ribosylation factor like GTPase 2 binding protein pseudogene 5 1.7765 0.0000
9 ENSG00000222432 Y RNA 1.6864 0.0000
10 ENSG00000187653 TMSB4XP8 TMSB4X pseudogene 8 1.6258 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000283805 MIR636 microRNA 636 -1.9128 0.0000
63127 ENSG00000239930 novel transcript -1.9122 0.0000
63126 ENSG00000259797 novel transcript, intronic to PRMT7 -1.9118 0.0000
63125 ENSG00000223046 RNA5SP369 RNA, 5S ribosomal pseudogene 369 -1.9115 0.0000
63124 ENSG00000265304 MIR3650 microRNA 3650 -1.9114 0.0000
63123 ENSG00000023318 ERP44 endoplasmic reticulum protein 44 -1.9112 0.0000
63122 ENSG00000107672 NSMCE4A NSE4 homolog A, SMC5-SMC6 complex component -1.9112 0.0000
63121 ENSG00000246790 novel transcript, antisense to SORL1 -1.9111 0.0000
63120 ENSG00000228957 pseudogene similar to part of ral guanine nucleotide dissociation stimulator RALGDS -1.9110 0.0000
63119 ENSG00000245322 H2AZ1-DT H2AZ1 divergent transcript -1.9099 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...