SHOGoiN Cell Methylome: GSM2773718

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773718


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M345Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213430 HSPD1P1 heat shock protein family D (Hsp60) member 1 pseudogene 1 2.5850 0.0000
2 ENSG00000224035 SFPQP1 splicing factor proline and glutamine rich pseudogene 1 2.5850 0.0001
3 ENSG00000241782 ribosomal protein L21 (RPL21) pseudogene 2.5850 0.0000
4 ENSG00000254459 novel transcript, antisense to AAMDC 2.5850 0.0000
5 ENSG00000255449 novel transcript, antisense to AAMDC 2.5850 0.0000
6 ENSG00000172208 OR4X2 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) 2.3219 0.0000
7 ENSG00000222693 RN7SKP120 RN7SK pseudogene 120 2.3219 0.0000
8 ENSG00000223169 RNA5SP209 RNA, 5S ribosomal pseudogene 209 2.3219 0.0004
9 ENSG00000227611 LINC01074 long intergenic non-protein coding RNA 1074 2.3219 0.0000
10 ENSG00000229307 LINC00459 long intergenic non-protein coding RNA 459 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253224 PGAM5P1 PGAM family member 5, mitochondrial serine/threonine protein phosphatase pseudogene 1 -1.9501 0.0004
63340 ENSG00000279726 novel transcript, antisense to PCDHA5, PCDHA4, PCDHA3, PCDHA2 and PCDHA1 -1.9498 0.0000
63339 ENSG00000255408 PCDHA3 protocadherin alpha 3 -1.9498 0.0000
63338 ENSG00000223875 NBEAP3 neurobeachin pseudogene 3 -1.9491 0.1044
63337 ENSG00000207173 NA -1.9485 0.0002
63336 ENSG00000185950 IRS2 insulin receptor substrate 2 -1.9485 0.0000
63335 ENSG00000112293 GPLD1 glycosylphosphatidylinositol specific phospholipase D1 -1.9482 0.0000
63334 ENSG00000275695 UBE2Q2P6 ubiquitin conjugating enzyme E2 Q2 pseudogene 6 -1.9481 0.0000
63333 ENSG00000201134 NA -1.9474 0.0000
63332 ENSG00000143772 ITPKB inositol-trisphosphate 3-kinase B -1.9467 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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