Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773718

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773718


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M345Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213430 HSPD1P1 heat shock protein family D (Hsp60) member 1 pseudogene 1 2.5850 0.0000
2 ENSG00000224035 SFPQP1 splicing factor proline and glutamine rich pseudogene 1 2.5850 0.0001
3 ENSG00000241782 ribosomal protein L21 (RPL21) pseudogene 2.5850 0.0000
4 ENSG00000254459 novel transcript, antisense to AAMDC 2.5850 0.0000
5 ENSG00000255449 novel transcript, antisense to AAMDC 2.5850 0.0000
6 ENSG00000172208 OR4X2 olfactory receptor family 4 subfamily X member 2 2.3219 0.0000
7 ENSG00000222693 RN7SKP120 RN7SK pseudogene 120 2.3219 0.0000
8 ENSG00000223169 RNA5SP209 RNA, 5S ribosomal pseudogene 209 2.3219 0.0004
9 ENSG00000227611 LINC01074 long intergenic non-protein coding RNA 1074 2.3219 0.0000
10 ENSG00000229307 LINC00459 long intergenic non-protein coding RNA 459 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000164543 STK17A serine/threonine kinase 17a -1.8791 0.0001
63127 ENSG00000053328 METTL24 methyltransferase like 24 -1.8790 0.0000
63126 ENSG00000259523 novel transcript, antisense to TJP1 -1.8787 0.0000
63125 ENSG00000128050 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase -1.8786 0.0000
63124 ENSG00000034533 ASTE1 asteroid homolog 1 -1.8784 0.0000
63123 ENSG00000186297 GABRA5 gamma-aminobutyric acid type A receptor subunit alpha5 -1.8781 0.0000
63122 ENSG00000168152 THAP9 THAP domain containing 9 -1.8781 0.0000
63120 ENSG00000255198 SNHG9 small nucleolar RNA host gene 9 -1.8775 0.0000
63119 ENSG00000267355 RPL9P29 ribosomal protein L9 pseudogene 29 -1.8773 0.0000
10 ENSG00000229307 LINC00459 long intergenic non-protein coding RNA 459 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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