Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773719

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773719


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M346Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241119 UGT1A9 UDP glucuronosyltransferase family 1 member A9 2.6778 0.0000
2 ENSG00000238813 NA 2.5850 0.0000
3 ENSG00000225350 FREM2-AS1 FREM2 antisense RNA 1 2.3219 0.0006
4 ENSG00000251931 RNU6-871P RNA, U6 small nuclear 871, pseudogene 2.3219 0.0006
5 ENSG00000270575 H3 histone, family 3C (H3F3C) pseudogene 2.3219 0.0006
6 ENSG00000184321 OR51J1 olfactory receptor family 51 subfamily J member 1 (gene/pseudogene) 2.0572 0.0000
7 ENSG00000247903 novel transcript, antisense to TM7SF3 2.0425 0.0000
8 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.0245 0.0000
9 ENSG00000207387 NA 2.0000 0.0000
10 ENSG00000207931 MIR577 microRNA 577 2.0000 0.0038

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000279068 novel transcript -1.9880 0.0000
63220 ENSG00000272674 PCDHB16 protocadherin beta 16 -1.9880 0.0000
63219 ENSG00000260370 novel transcript -1.9880 0.0000
63218 ENSG00000265943 novel transcript, antisense to RBBP8 -1.9880 0.0000
63217 ENSG00000187372 PCDHB13 protocadherin beta 13 -1.9877 0.0000
63216 ENSG00000135045 C9orf40 chromosome 9 open reading frame 40 -1.9877 0.0000
63215 ENSG00000189419 SPATA41 spermatogenesis associated 41 -1.9868 0.0000
63214 ENSG00000249249 novel transcript -1.9865 0.0000
63213 ENSG00000161180 CCDC116 coiled-coil domain containing 116 -1.9864 0.0000
63212 ENSG00000223991 novel transcript -1.9861 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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