Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773719

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773719


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M346Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241119 UGT1A9 UDP glucuronosyltransferase family 1 member A9 2.6778 0.0000
2 ENSG00000238813 Y RNA 2.5850 0.0000
3 ENSG00000225350 FREM2-AS1 FREM2 antisense RNA 1 2.3219 0.0006
4 ENSG00000251931 RNU6-871P RNA, U6 small nuclear 871, pseudogene 2.3219 0.0006
5 ENSG00000270575 H3 histone, family 3C (H3F3C) pseudogene 2.3219 0.0006
6 ENSG00000184321 OR51J1 olfactory receptor family 51 subfamily J member 1 2.0572 0.0000
7 ENSG00000247903 novel transcript, antisense to TM7SF3 2.0425 0.0000
8 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.0245 0.0000
9 ENSG00000207387 Y RNA 2.0000 0.0000
10 ENSG00000207931 MIR577 microRNA 577 2.0000 0.0038

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000238387 NA -1.9733 0.0000
63172 ENSG00000182636 NDN necdin, MAGE family member -1.9728 0.0000
63171 ENSG00000279393 TEC -1.9726 0.0000
63170 ENSG00000229497 novel pseudogene similar to LOC203547 -1.9721 0.0000
63169 ENSG00000234740 novel transcript -1.9721 0.0000
63168 ENSG00000218089 DNAJA1P4 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 4 -1.9717 0.0000
63167 ENSG00000221639 NA -1.9712 0.0000
63166 ENSG00000249808 long intergenic non-protein coding RNA 1377 -1.9709 0.0002
63165 ENSG00000112273 HDGFL1 HDGF like 1 -1.9706 0.0032
63164 ENSG00000260807 CEROX1 cytoplasmic endogenous regulator of oxidative phosphorylation 1 -1.9705 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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