SHOGoiN Cell Methylome: GSM2773719

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773719


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M346Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241119 UGT1A9 UDP glucuronosyltransferase family 1 member A9 2.6778 0.0000
2 ENSG00000238813 NA 2.5850 0.0000
3 ENSG00000225350 FREM2-AS1 FREM2 antisense RNA 1 2.3219 0.0006
4 ENSG00000251931 RNU6-871P RNA, U6 small nuclear 871, pseudogene 2.3219 0.0006
5 ENSG00000270575 H3 histone, family 3C (H3F3C) pseudogene 2.3219 0.0006
6 ENSG00000184321 OR51J1 olfactory receptor family 51 subfamily J member 1 (gene/pseudogene) 2.0572 0.0000
7 ENSG00000247903 novel transcript, antisense to TM7SF3 2.0425 0.0000
8 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.0245 0.0000
9 ENSG00000207387 NA 2.0000 0.0000
10 ENSG00000207931 MIR577 microRNA 577 2.0000 0.0038

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000282995 FRG1EP FSHD region gene 1 family member E, pseudogene -2.0149 0.0000
63340 ENSG00000226747 FSIP2-AS2 FSIP2 antisense RNA 2 -2.0143 0.0000
63339 ENSG00000244486 SCARF2 scavenger receptor class F member 2 -2.0135 0.0000
63338 ENSG00000234361 novel transcript -2.0131 0.0000
63337 ENSG00000163704 PRRT3 proline rich transmembrane protein 3 -2.0129 0.0000
63336 ENSG00000261044 novel transcript, antisense to ARC -2.0126 0.0000
63335 ENSG00000222982 RN7SKP216 RN7SK pseudogene 216 -2.0123 0.0011
63334 ENSG00000229391 HLA-DRB6 major histocompatibility complex, class II, DR beta 6 (pseudogene) -2.0121 0.0000
63333 ENSG00000198535 C2CD4A C2 calcium dependent domain containing 4A -2.0112 0.0000
63332 ENSG00000243414 TICAM2 toll like receptor adaptor molecule 2 -2.0111 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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