SHOGoiN Cell Methylome: GSM2773720

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773720


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M347Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233107 SUCLA2P2 succinate-CoA ligase ADP-forming beta subunit pseudogene 2 2.5480 0.0000
2 ENSG00000244031 RPS3AP17 ribosomal protein S3a pseudogene 17 2.3219 0.0001
3 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.0000 0.0013
4 ENSG00000199977 NA 2.0000 0.0013
5 ENSG00000200385 NA 2.0000 0.0013
6 ENSG00000212324 RNU6-129P RNA, U6 small nuclear 129, pseudogene 2.0000 0.0013
7 ENSG00000214285 NPS neuropeptide S 2.0000 0.0000
8 ENSG00000230116 ribosomal protein S3a (RPS3A) pseudogene 2.0000 0.0000
9 ENSG00000234560 OR10G8 olfactory receptor family 10 subfamily G member 8 2.0000 0.0013
10 ENSG00000235197 ZNF33CP zinc finger protein 33C, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000121774 KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 -1.6802 0.0000
63340 ENSG00000168283 BMI1 BMI1 proto-oncogene, polycomb ring finger -1.6793 0.0000
63339 ENSG00000239467 glutamate rich 2 -1.6793 0.4065
63338 ENSG00000206708 RNU6-1227P RNA, U6 small nuclear 1227, pseudogene -1.6793 0.2561
63337 ENSG00000201440 RNA5SP515 RNA, 5S ribosomal pseudogene 515 -1.6789 0.0000
63336 ENSG00000212747 RTL8B retrotransposon Gag like 8B -1.6788 0.0000
63335 ENSG00000201145 RNA5SP175 RNA, 5S ribosomal pseudogene 175 -1.6782 0.0003
63334 ENSG00000278739 MIR6859-4 microRNA 6859-4 -1.6778 0.0000
63333 ENSG00000222102 RN7SKP232 RN7SK pseudogene 232 -1.6773 0.0016
63332 ENSG00000225236 cleavage and polyadenylation specific factor 5 25 kDa (CPSF5) pseudogene -1.6770 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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