Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773720

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773720


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M347Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233107 SUCLA2P2 SUCLA2 pseudogene 2 2.5480 0.0000
2 ENSG00000244031 RPS3AP17 RPS3A pseudogene 17 2.3219 0.0001
3 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.0000 0.0013
4 ENSG00000199977 Small nucleolar RNA SNORA73 family 2.0000 0.0013
5 ENSG00000200385 NA 2.0000 0.0013
6 ENSG00000212324 RNU6-129P RNA, U6 small nuclear 129, pseudogene 2.0000 0.0013
7 ENSG00000214285 NPS neuropeptide S 2.0000 0.0000
8 ENSG00000230116 RPS3AP11 RPS3A pseudogene 11 2.0000 0.0000
9 ENSG00000234560 OR10G8 olfactory receptor family 10 subfamily G member 8 2.0000 0.0013
10 ENSG00000235197 ZNF33CP zinc finger protein 33C, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000213642 novel pseudogene -1.6292 0.0000
63127 ENSG00000259248 USP3-AS1 USP3 antisense RNA 1 -1.6289 0.0000
63126 ENSG00000230549 USP17L1 ubiquitin specific peptidase 17 like family member 1 -1.6285 0.0679
63125 ENSG00000127554 GFER growth factor, augmenter of liver regeneration -1.6283 0.0000
63124 ENSG00000221464 MIR1271 microRNA 1271 -1.6283 0.0000
63123 ENSG00000278026 NA -1.6277 0.0000
63122 ENSG00000102678 FGF9 fibroblast growth factor 9 -1.6273 0.0000
63121 ENSG00000196570 PFN3 profilin 3 -1.6272 0.0000
63120 ENSG00000226608 FTLP3 ferritin light chain pseudogene 3 -1.6265 0.0000
63119 ENSG00000266302 novel transcript -1.6258 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...